Browse Element(s) Details


OsAffx.32034.1.S1_at

Description tigr:9640.m03414
TID=OsAffx.32034.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3531011/11hypothetical protein
LOC_Os08g0786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35270Os.15984.1.S1_at11/1112+21396182..21398248expressed protein
LOC_Os12g35280NANA12+21398970..21405377retrotransposon protein, putative, unclassified
LOC_Os12g35290Os.15282.1.S1_at11/1112+21407866..21414262Dor1-like family protein, expressed
LOC_Os12g35299NANA12+21417306..21417548NA
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein
LOC_Os12g35340Os.51753.1.A1_at11/1112+21446659..21447622Glutaredoxin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32034.1.S1_at--62--6972Chr12:21421691..21421715 (25 bp)
GTAGCCCTGCAACTCAATGTCCAGG
LOC_Os12g35310
OsAffx.32034.1.S1_at--689--532Chr12:21421785..21421809 (25 bp)
ATCGCCACCGCGGAGGATGGATTCG
LOC_Os12g35310
OsAffx.32034.1.S1_at--785--8572Chr12:21421802..21421826 (25 bp)
TGGATTCGTCCACCTGCTGAGGGAA
LOC_Os12g35310
OsAffx.32034.1.S1_at--1054--4012Chr12:21421961..21421985 (25 bp)
CGTCTCGCTGGCCATAGGAGTCGAC
LOC_Os12g35310
OsAffx.32034.1.S1_at--7--992Chr12:21421976..21422000 (25 bp)
AGGAGTCGACCAGTGAGCTTTGTTG
LOC_Os12g35310
OsAffx.32034.1.S1_at--1126--10352Chr12:21422073..21422097 (25 bp)
TTTTTGTAACATATGCAGCCAGGTG
LOC_Os12g35310
OsAffx.32034.1.S1_at--599--3474Chr12:21422092..21422116 (25 bp)
CAGGTGCGGGCGGTTTTCTGCAAAA
LOC_Os12g35310
OsAffx.32034.1.S1_at--952--6252Chr12:21422141..21422165 (25 bp)
GATGGGAGCTTATCATGGTCGTTCA
LOC_Os12g35310
OsAffx.32034.1.S1_at--642--3492Chr12:21422154..21422178 (25 bp)
CATGGTCGTTCAGATTGGATGCAAC
LOC_Os12g35310
OsAffx.32034.1.S1_at--540--6033Chr12:21422183..21422207 (25 bp)
GAGATTAGTATTTCCAAGTTTGCAA
LOC_Os12g35310
OsAffx.32034.1.S1_at--879--7772Chr12:21422213..21422237 (25 bp)
GGTGCATTTTCACAGGATATGGCCT
LOC_Os12g35310
Target Sequence 
GTAGCCCTGCAACTCAATGTCCAGGTCAGGGGAGCGGTCGGGGGCGAGGTTGCTAACGGCCTTAGGGGATTGGGTAGCGC
CGATGCCGTTCGCCATCGCCACCGCGGAGGATGGATTCGTCCACCTGCTGAGGGAAGAACCAGCAGAGGAGGAGGAGGAG
GAGGATGGAGAAGAGACGGCTGCGGCGGCGGCGGCGGGGTGAAGGTGAAGGCGGTCTTGAAGCGCGCCGAGATGGAGTGG
CTCATGGCGCAGCTCAAGACCGGCGACCGCCGTCTCGCTGGCCATAGGAGTCGACCAGTGAGCTTTGTTGGAACAAATCA
TGGTAGCAGTACATTACAAGATGAGAGGGATAGAATCTATAAAGAAGATGAGTATAGGGTTTTTTTTGTAACATATGCAG
CCAGGTGCGGGCGGTTTTCTGCAAAAGTGCATCCAACAGGTGAGAGAGTGGATGGGAGCTTATCATGGTCGTTCAGATTG
GATGCAACGGTGGAGATTAGTATTTCCAAGTTTGCAACATTTGGTGCATTTTCACAGGATATGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis