Browse Element(s) Details


Os.15282.1.S1_at

Description gb:AK067402.1
DB_XREF= gi:32977420
TID=Os.15282.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106G16, full insert sequence.
FL= gb:AK067402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3529011/11Dor1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35239NANA12+21383036..21385695transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35250Os.40626.2.S1_x_at10/1112+21386916..21390586hAT family dimerisation domain containing protein
LOC_Os12g35250Os.40626.1.S1_at3/1112+21386916..21390586hAT family dimerisation domain containing protein
LOC_Os12g35260NANA12+21393897..21394676hypothetical protein
LOC_Os12g35270Os.15984.1.S1_at11/1112+21396182..21398248expressed protein
LOC_Os12g35280NANA12+21398970..21405377retrotransposon protein, putative, unclassified
LOC_Os12g35290Os.15282.1.S1_at11/1112+21407866..21414262Dor1-like family protein, expressed
LOC_Os12g35299NANA12+21417306..21417548NA
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15282.1.S1_at--623--4091Chr12:21413665..21413689 (25 bp)
CGAACGGAGGCAATCAGGCAGCATT
LOC_Os12g35290
Os.15282.1.S1_at--71--2431Chr12:21413695..21413719 (25 bp)
AAAACAGTCTGGAGCCATTGAACGT
LOC_Os12g35290
Os.15282.1.S1_at--123--7631Chr12:21413768..21413792 (25 bp)
GGGACAACAGCCACCGACAATGGGA
LOC_Os12g35290
Os.15282.1.S1_at--1109--1751Chr12:21413809..21413833 (25 bp)
ACCTCCAGTGGCGAACGATGATTCT
LOC_Os12g35290
Os.15282.1.S1_at--461--5451Chr12:21413821..21413845 (25 bp)
GAACGATGATTCTGGGACCTCCTCA
LOC_Os12g35290
Os.15282.1.S1_at--566--1571Chr12:21413851..21413875 (25 bp)
AGCTCAGCCTGATGGGCAAACCACT
LOC_Os12g35290
Os.15282.1.S1_at--1049--1971Chr12:21413873..21413897 (25 bp)
ACTGCAGCAGCAAGTACGTAGCTTT
LOC_Os12g35290
Os.15282.1.S1_at--263--3691Chr12:21413894..21413918 (25 bp)
CTTTGACTTTGTTAATGCCTTTGAT
LOC_Os12g35290
Os.15282.1.S1_at--169--3031Chr12:21413907..21413931 (25 bp)
AATGCCTTTGATGGAACCTGTCGAA
LOC_Os12g35290
Os.15282.1.S1_at--1002--7212Chr12:21413926..21413950 (25 bp)
GTCGAAGTTTTTTGGTCATGGCCTT
LOC_Os12g35290
Os.15282.1.S1_at--1041--871Chr12:21413943..21413967 (25 bp)
ATGGCCTTGGGTTATCGTCAGCCAA
LOC_Os12g35290
Target Sequence 
CGAACGGAGGCAATCAGGCAGCATTGAGAGAAAACAGTCTGGAGCCATTGAACGTAAGCAATCGGAAGGCATCGAAAGAA
AGCAGTCGATCGACGAGAGCGCGGGGACAACAGCCACCGACAATGGGACCCCAGCTAACGGACCACCTCCAGTGGCGAAC
GATGATTCTGGGACCTCCTCAGCACCAGCTCAGCCTGATGGGCAAACCACTGCAGCAGCAAGTACGTAGCTTTGACTTTG
TTAATGCCTTTGATGGAACCTGTCGAAGTTTTTTGGTCATGGCCTTGGGTTATCGTCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis