Browse Element(s) Details


OsAffx.7795.1.S1_at

Description tigr:9640.m03416
TID=OsAffx.7795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3533011/11Glutaredoxin-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35290Os.15282.1.S1_at11/1112+21407866..21414262Dor1-like family protein, expressed
LOC_Os12g35299NANA12+21417306..21417548NA
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein
LOC_Os12g35340Os.51753.1.A1_at11/1112+21446659..21447622Glutaredoxin-like family protein, expressed
LOC_Os12g35350Os.47924.1.S1_at11/1112+21454591..21460247Kelch motif family protein, expressed
LOC_Os12g35360Os.7208.1.S1_at11/1112+21460372..21467391vesicle tethering family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7795.1.S1_at--1035--4311Chr12:21435740..21435764 (25 bp)
CCTTGAGCTCATGCTGCATGTGCCA
LOC_Os12g35330
OsAffx.7795.1.S1_at--416--7371Chr12:21435769..21435793 (25 bp)
GTGACACGCCTCTTCTGTGATCTCG
LOC_Os12g35330
OsAffx.7795.1.S1_at--718--4451Chr12:21435776..21435800 (25 bp)
GCCTCTTCTGTGATCTCGGTGTCAA
LOC_Os12g35330
OsAffx.7795.1.S1_at--148--7411Chr12:21435785..21435809 (25 bp)
GTGATCTCGGTGTCAACGCGCTAGT
LOC_Os12g35330
OsAffx.7795.1.S1_at--50--7451Chr12:21435794..21435818 (25 bp)
GTGTCAACGCGCTAGTGCATGAGCT
LOC_Os12g35330
OsAffx.7795.1.S1_at--253--1831Chr12:21435800..21435824 (25 bp)
ACGCGCTAGTGCATGAGCTGGACCA
LOC_Os12g35330
OsAffx.7795.1.S1_at--1093--3511Chr12:21435811..21435835 (25 bp)
CATGAGCTGGACCAAGACCCTAGGG
LOC_Os12g35330
OsAffx.7795.1.S1_at--820--6231Chr12:21435843..21435867 (25 bp)
GATGGAGAGGGCACTCCTCAAGCTG
LOC_Os12g35330
OsAffx.7795.1.S1_at--307--4211Chr12:21435880..21435904 (25 bp)
CCGCCTGTGCCGGTGGTGTTCATTG
LOC_Os12g35330
OsAffx.7795.1.S1_at--259--2811Chr12:21435931..21435955 (25 bp)
AAGATCATGTCCCTCCACCTTGGAG
LOC_Os12g35330
OsAffx.7795.1.S1_at--1074--1731Chr12:21435947..21435971 (25 bp)
ACCTTGGAGGTGAGCTGATCCCCAT
LOC_Os12g35330
Target Sequence 
CCTTGAGCTCATGCTGCATGTGCCACACCGTGACACGCCTCTTCTGTGATCTCGGTGTCAACGCGCTAGTGCATGAGCTG
GACCAAGACCCTAGGGGCAAGGAGATGGAGAGGGCACTCCTCAAGCTGCTCGGAAGGGGGCCGCCTGTGCCGGTGGTGTT
CATTGGTGGGAAGCTCGTTGGGGGAACCAACAAGATCATGTCCCTCCACCTTGGAGGTGAGCTGATCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis