Browse Element(s) Details


Os.47924.1.S1_at

Description gb:AK100645.1
DB_XREF= gi:32985854
TID=Os.47924.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110K24, full insert sequence.
FL= gb:AK100645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3535011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein
LOC_Os12g35340Os.51753.1.A1_at11/1112+21446659..21447622Glutaredoxin-like family protein, expressed
LOC_Os12g35350Os.47924.1.S1_at11/1112+21454591..21460247Kelch motif family protein, expressed
LOC_Os12g35360Os.7208.1.S1_at11/1112+21460372..21467391vesicle tethering family protein, putative, expressed
LOC_Os12g35364OsAffx.14791.1.S1_at1/1112+21470164..21470771hypothetical protein
LOC_Os12g35370OsAffx.22421.2.S1_at3/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.4.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370Os.26886.3.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.1.S1_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.27435.1.S1_x_at2/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.51856.1.S2_x_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.46334.1.S1_x_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.51856.1.S2_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47924.1.S1_at--200--8011Chr12:21459304..21459328 (25 bp)
GGAGAAGAATTTATCGTCGGTCATC
LOC_Os12g35350
Os.47924.1.S1_at--7--10151Chr12:21459315..21459339 (25 bp)
TATCGTCGGTCATCAACAGCAGGGA
LOC_Os12g35350
Os.47924.1.S1_at--899--9691Chr12:21459243..21459626 (25 bp)
TCAAAAGGAACTCCATTCGACCCGC
LOC_Os12g35350
Os.47924.1.S1_at--453--4151Chr12:21459624..21459648 (25 bp)
CGCCGAGTTTTAGCGGGAGAACAGT
LOC_Os12g35350
Os.47924.1.S1_at--854--5971Chr12:21459640..21459664 (25 bp)
GAGAACAGTCGAGGGCATTCCAGCT
LOC_Os12g35350
Os.47924.1.S1_at--428--6691Chr12:21459954..21459978 (25 bp)
GTTCCATCTCAAACAACGGTTGCAG
LOC_Os12g35350
Os.47924.1.S1_at--469--5431Chr12:21460005..21460029 (25 bp)
GAACCCTCCTGTTTAATCCATAGTA
LOC_Os12g35350
Os.47924.1.S1_at--1036--1211Chr12:21460054..21460078 (25 bp)
AGTTCATATGTTTACATCTCTGGAA
LOC_Os12g35350
Os.47924.1.S1_at--307--7511Chr12:21460084..21460108 (25 bp)
GTGGTTGTGTGTTTGTAACATCGTC
LOC_Os12g35350
Os.47924.1.S1_at--582--7891Chr12:21460155..21460179 (25 bp)
GGTTCGGTTAACCATTCTGTTACAT
LOC_Os12g35350
Os.47924.1.S1_at--540--9751Chr12:21460197..21460221 (25 bp)
TAATTTGGCTGAGATTTTGTGTGCA
LOC_Os12g35350
Target Sequence 
GGAGAAGAATTTATCGTCGGTCATCAACAGCAGGGAGCAGCTGGAAAGGAGGCTTGCCAATAAGGAAAAGGAAGCTGAGA
TNNTGAAGGAGAAGNTANCAGNNTTAGAGTNGNCACAAGAGGAGTCAAACAACNTNTCGAACACCGTTCANNCCGATAAT
GTGCNTCTGGAACGTGAAGTGNCATTCTTGAAGNCCATTACAGATGAGACTCAAAAGGAACTCCATTCGACCCGCCGAGT
TTTAGCGGGAGAACAGTCGAGGGCATTCCAGCTCCAGGTTGAAGTGTTCCATCTCAAACAACGGTTGCAGATGGAAGGAA
GAGCGGGAACGCCAAAGAACCCTCCTGTTTAATCCATAGTAAGCAACAAAGAGCNAAGTGTGTTTAGTTCATATGTTTAC
ATCTCTGGAATAATAGTGGTTGTGTGTTTGTAACATCGTCTNTGTACATCAATNTTGTTACNAGGAGTGGAGTGTATATG
TAATAACAGGGTTCGGTTAACCATTCTGTTACATGAACTGATACAGATTTGTAATTTGGCTGAGATTTTGTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis