Browse Element(s) Details


OsAffx.14791.1.S1_at

Description tigr:9633.m02100
TID=OsAffx.14791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2365011/11hypothetical protein
LOC_Os12g353641/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class
LOC_Os05g23670Os.49210.1.S1_at11/115+13495777..13501573jmjC domain containing protein, expressed
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14791.1.S1_at--69--4612Chr12:21470465..21470490 (23 bp)
GCGACCTCCGGGATGTCGTCGTCGA
LOC_Os12g35364
OsAffx.14791.1.S1_at--611--2771Chr05:13488345..13488369 (25 bp)
AAGAGAATATGTCGGAGGACTCGCC
LOC_Os05g23650
OsAffx.14791.1.S1_at--735--4031Chr05:13488312..13488336 (25 bp)
CGTTGTCTGGGCTCCCCATATAGCA
LOC_Os05g23650
OsAffx.14791.1.S1_at--1142--4311Chr05:13488297..13488321 (25 bp)
CCATATAGCACTGCTTCAGATGCCA
LOC_Os05g23650
OsAffx.14791.1.S1_at--701--6331Chr05:13487952..13487976 (25 bp)
GATGCATCCAGAAGGGAGGGCTCGA
LOC_Os05g23650
OsAffx.14791.1.S1_at--394--4691Chr05:13487915..13487939 (25 bp)
GCGGCAGCGGCACTGCCATCTTCTA
LOC_Os05g23650
OsAffx.14791.1.S1_at--6--9511Chr05:13487885..13487909 (25 bp)
TCTCCTCTTCTCCTAGTAGTTGTCG
LOC_Os05g23650
OsAffx.14791.1.S1_at--566--10571Chr05:13487878..13487902 (25 bp)
TTCTCCTAGTAGTTGTCGGCGCCGT
LOC_Os05g23650
OsAffx.14791.1.S1_at--945--9231Chr05:13487875..13487899 (25 bp)
TCCTAGTAGTTGTCGGCGCCGTCTC
LOC_Os05g23650
OsAffx.14791.1.S1_at--739--8051Chr05:13487845..13487869 (25 bp)
GGAGCTTGAGCTCAACGAAATCCAG
LOC_Os05g23650
OsAffx.14791.1.S1_at--333--4931Chr05:13487842..13487866 (25 bp)
GCTTGAGCTCAACGAAATCCAGAAG
LOC_Os05g23650
Target Sequence 
GCGACCTCCGGGATGTCGTCGTCGACCGCGGCGAGGTAGTCGGCGGAGGTGGCAAGGTCGAGGGAAGAGAATATGTCGGA
GGACTCGCCGGCCACCTCGTTGTCTGGGCTCCCCATATAGCACTGCTTCAGATGCCATCCATGGAGGAGAGGAGGAAGAC
GGTGCAGCGGCGCGCAGGGGTCGATGCATCCAGAAGGGAGGGCTCGAGGGGCACCGTCGGCGGCAGCGGCACTGCCATCT
TCTACCTCCTCTCCTCTTCTCCTAGTAGTTGTCGGCGCCGTCTCCATGGGGAGCTTGAGCTCAACGAAATCCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis