Browse Element(s) Details


OsAffx.26986.1.S1_at

Description tigr:9633.m02098
TID=OsAffx.26986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g236306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class
LOC_Os05g23670Os.49210.1.S1_at11/115+13495777..13501573jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26986.1.S1_at--303--4092Chr12:15259622..15259644 (22 bp)
CGACGAAGCTCGTGGTGCGCCGACA
NONE
OsAffx.26986.1.S1_at--794--5791Chr05:13476294..13476318 (25 bp)
GACGAAGCTCGTGGTGCGCCGACAA
LOC_Os05g23630
OsAffx.26986.1.S1_at--381--1831Chr05:13476295..13476319 (25 bp)
ACGAAGCTCGTGGTGCGCCGACAAC
LOC_Os05g23630
OsAffx.26986.1.S1_at--1063--5371Chr05:13476297..13476321 (25 bp)
GAAGCTCGTGGTGCGCCGACAACGC
LOC_Os05g23630
OsAffx.26986.1.S1_at--390--9431Chr05:13476302..13476326 (25 bp)
TCGTGGTGCGCCGACAACGCGAGCT
LOC_Os05g23630
OsAffx.26986.1.S1_at--129--7791Chr05:13476306..13476330 (25 bp)
GGTGCGCCGACAACGCGAGCTGCGG
LOC_Os05g23630
OsAffx.26986.1.S1_at--10--4091NONE
CGAGCTGCGGCGACTCATGCCACGG
NONE
OsAffx.26986.1.S1_at--16--1611NONE
AGCTGCGGCGACTCATGCCACGGGC
NONE
OsAffx.26986.1.S1_at--757--9131NONE
TGCGGCGACTCATGCCACGGGCGGT
NONE
OsAffx.26986.1.S1_at--112--4611NONE
GCGACTCATGCCACGGGCGGTGGAT
NONE
OsAffx.26986.1.S1_at--428--2011Chr05:13476019..13476357 (25 bp)
ACTCATGCCACGGGCGGTGGATCTG
NONE
Target Sequence 
CGACGAAGCTCGTGGTGCGCCGACAACGCGAGCTGCGGCGACTCATGCCACGGGCGGTGGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis