Browse Element(s) Details


Os.11245.1.S1_at

Description gb:AK067027.1
DB_XREF= gi:32977045
TID=Os.11245.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092N03, full insert sequence.
FL= gb:AK067027.1 gb:AK104884.1 gb:AK070329.1 gb:AK059501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2360011/11Ribophorin I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004576molecular_functionoligosaccharyl transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11245.1.S1_at--112--2131Chr05:13452692..13452716 (25 bp)
ACAGTGCTCAGTATCTGTCACCTTA
LOC_Os05g23600
Os.11245.1.S1_at--160--6631Chr05:13452763..13452787 (25 bp)
GTTGAGTCCTACACAAAGTACCCAA
LOC_Os05g23600
Os.11245.1.S1_at--702--8991Chr05:13452828..13452852 (25 bp)
TGAAGATCTTCCACCGTTTTCCTAC
LOC_Os05g23600
Os.11245.1.S1_at--449--1991Chr05:13452851..13452875 (25 bp)
ACTCCCCTATGGTTGTGCACTATGA
LOC_Os05g23600
Os.11245.1.S1_at--204--5511Chr05:13452876..13452900 (25 bp)
GAACAATAACCCTTTTGCAGTTGCA
LOC_Os05g23600
Os.11245.1.S1_at--1075--10711Chr05:13452968..13452992 (25 bp)
TTGCTCATGGTGGTGCCAAACTCAA
LOC_Os05g23600
Os.11245.1.S1_at--21--7711Chr05:13453134..13453158 (25 bp)
GGGTCTCATCTTTTAGGCATCTTAT
LOC_Os05g23600
Os.11245.1.S1_at--1042--431Chr05:13453152..13453176 (25 bp)
ATCTTATTGCTAGACTGCCTCCAAG
LOC_Os05g23600
Os.11245.1.S1_at--77--8991Chr05:13453354..13453378 (25 bp)
TGAAGTTGAGCCAAGGTTTCCTTTG
LOC_Os05g23600
Os.11245.1.S1_at--61--7851Chr05:13453385..13453409 (25 bp)
GGTTGGCAAACGACCTTTACCATTG
LOC_Os05g23600
Os.11245.1.S1_at--1028--7871Chr05:13453409..13453433 (25 bp)
GGTTATGGTTTACCTCTTCAAGACT
LOC_Os05g23600
Target Sequence 
ACAGTGCTCAGTATCTGTCACCTTACCCTGTTAAGGTACAGACACTTAGTATCAGATTGCCTGGTGGAAGAGTTGAGTCC
TACACAAAGTACCCAAACACAAAACTTGCAGAGTCAGAACTAAAATATGGACCATATGAAGATCTTCCACCGTTTTCCTA
CTCCCCTATGGTTGTGCACTATGAGAACAATAACCCTTTTGCAGTTGCAAAGGAAGTTATAAGGGAGATAGAGATATCTC
ACTGGGGGAATGTACAGATTANCNGAACATTNCANCATTGCTCATGGTGGTGCCAAACTCAAGGGTGAATTTTCCAGGAT
TGATTACCAATCTAGACCGTACATAAGAGGGGTCTCATCTTTTAGGCATCTTATTGCTAGACTGCCTCCAAGGGCACATT
CTATATACTACAGAGATGAGATTGGTAACATTTCAACATCACATTTATGGAGTGATTCCAAGAAGACTCAACTTGAAGTT
GAGCCAAGGTTTCCTTTGTTTGGTGGTTGGCAAACGACCTTTACCATTGGTTATGGTTTACCTCTTCAAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis