Browse Element(s) Details


Os.17851.1.S1_at

Description gb:AK073928.1
DB_XREF= gi:32983951
TID=Os.17851.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073L20, full insert sequence.
FL= gb:AK073928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2361011/11Protein phosphatase inhibitor 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17851.1.S1_at--264--6071Chr05:13462447..13462471 (25 bp)
GAGTTTCAAGGAACATCGTCGTGCT
LOC_Os05g23610
Os.17851.1.S1_at--614--6351Chr05:13462504..13462528 (25 bp)
GATGCGCTCCGGATCGCTGATTGAC
LOC_Os05g23610
Os.17851.1.S1_at--1151--10371Chr05:13462652..13462676 (25 bp)
TTTTCCCTGTTGTTTGCTAAGCTAG
LOC_Os05g23610
Os.17851.1.S1_at--32--631Chr05:13462727..13462751 (25 bp)
ATGCTTTGCCTGTGTGTTAGATCCT
LOC_Os05g23610
Os.17851.1.S1_at--1141--6251Chr05:13462766..13462790 (25 bp)
GATGTGCATCCTGTAAACGACGCAT
LOC_Os05g23610
Os.17851.1.S1_at--326--7051Chr05:13462778..13462802 (25 bp)
GTAAACGACGCATGCCATTCATCTT
LOC_Os05g23610
Os.17851.1.S1_at--505--3591Chr05:13462793..13462817 (25 bp)
CATTCATCTTCCCTTTGTGTTTAAG
LOC_Os05g23610
Os.17851.1.S1_at--623--8871Chr05:13462822..13462846 (25 bp)
TGATGTACCTAGAATGGCTTTGATT
LOC_Os05g23610
Os.17851.1.S1_at--1030--6851Chr05:13462849..13462873 (25 bp)
GTTTGAGTTGCCTAGCTACATTTAC
LOC_Os05g23610
Os.17851.1.S1_at--910--2571Chr05:13462880..13462904 (25 bp)
AACGGTGAGCTCCTTTGCATGTTCA
LOC_Os05g23610
Os.17851.1.S1_at--82--6511Chr05:13462968..13462992 (25 bp)
GATATGGCCTTGATTTGTTTCACGC
LOC_Os05g23610
Target Sequence 
GAGTTTCAAGGAACATCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTG
ACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTGTAGGAAAGAAGCCAGCAGGCTGTGAC
AGCACACCCCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCA
ACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAG
ATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATT
TAGTTTGAGTTGCCTAGCTACATTTACTTNNTGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGC
TGATACTCAAACCACATATTNGGATAAGGCCAGATATGGCAAGATATGGCCTTGATTTGTTTCACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis