Browse Element(s) Details


OsAffx.26985.1.S1_x_at

Description tigr:9633.m02097
TID=OsAffx.26985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome C1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2362011/11Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g709601/11Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005746cellular_componentmitochondrial electron transport chain
GO:0045153molecular_functionelectron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26985.1.S1_x_at--1030--4212Chr01:41403756..41403779 (24 bp)
CCGAGATTTGGTTGGTGTGGCCTAC
LOC_Os01g70960
OsAffx.26985.1.S1_x_at--1131--8951Chr05:13466450..13466474 (25 bp)
TGAAATGTTCACACGTCCTGGTAAG
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--14--591Chr05:13466400..13466424 (25 bp)
ATCCAAATGAGCAAGCAGCCCGTTT
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--255--3371Chr05:13466355..13466379 (25 bp)
CACCAGATCTCAGTCTTATCACGAA
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--656--7411Chr05:13466220..13466244 (25 bp)
GTGTTTGCTCTTCTTACTGGTTACC
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--1016--1271Chr05:13465678..13465702 (25 bp)
AGATCCGTGAGGGTTTGCATTACAA
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--1137--7491Chr05:13465639..13465663 (25 bp)
GTGGTGCCATAGCTATGCCCAAGAT
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--1129--251Chr05:13465593..13465617 (25 bp)
ATATGAAGATGGTACTCCTGCCACT
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--937--2911Chr05:13465459..13465483 (25 bp)
AAGGATGTCGTTTCGTTCTTGTCAT
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--79--2311Chr05:13465306..13465330 (25 bp)
AAATGGATCTTCCTACTGTCACTTG
LOC_Os05g23620
OsAffx.26985.1.S1_x_at--58--311Chr05:13465265..13465289 (25 bp)
ATACTACCGTCGCATGAGGTGGTCC
LOC_Os05g23620
Target Sequence 
CCGAGATTTGGTTGGTGTGGCCTACACTGAAGAAGAAACAAAGGCTATGGCTGCTGAGATTGAGGTGGTTGATGGTCCTA
ATGATGAGGGTGAAATGTTCACACGTCCTGGTAAGTTAAGTGACCGGTTCCCACAACCATATCCAAATGAGCAAGCAGCC
CGTTTTGCAAATGGTGGGGCATACCCACCAGATCTCAGTCTTATCACGAAGGCAAGGCACAATGGCCAGAACTATGTGTT
TGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGATCCGTGAGGGTTTGCATTACAATCCCTACTTCCCTG
GTGGTGCCATAGCTATGCCCAAGATGCTTATAGATGGAGCTGTTGAATATGAAGATGGTACTCCTGCCACTGAAGCCCAG
ATGGGCAAGGATGTCGTTTCGTTCTTGTCATGGGCAGCTGAACCTGAGATGGAAGAGAGGAAACTGATGGGAGTGAAATG
GATCTTCCTACTGTCACTTGCACTTCTCCAAGCCGCATACTACCGTCGCATGAGGTGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26985.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis