Browse Element(s) Details


Os.10952.1.S1_at

Description gb:AK070578.1
DB_XREF= gi:32980602
TID=Os.10952.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061F14, full insert sequence.
FL= gb:AK070578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2362011/11Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005746cellular_componentmitochondrial electron transport chain
GO:0045153molecular_functionelectron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10952.1.S1_at--661--8811Chr05:13465211..13465235 (25 bp)
TGTTGTCAACTGAGGGACCACTGTT
LOC_Os05g23620
Os.10952.1.S1_at--86--2551Chr05:13465204..13465228 (25 bp)
AACTGAGGGACCACTGTTTCTTACT
LOC_Os05g23620
Os.10952.1.S1_at--23--7951Chr05:13465197..13465221 (25 bp)
GGACCACTGTTTCTTACTTTCATTA
LOC_Os05g23620
Os.10952.1.S1_at--609--2431Chr05:13465173..13465197 (25 bp)
AAAATGTTTTGAGCATTTAAGCGGA
LOC_Os05g23620
Os.10952.1.S1_at--24--4691Chr05:13465153..13465177 (25 bp)
GCGGAAGCATTTCAAATAATGAGTA
LOC_Os05g23620
Os.10952.1.S1_at--843--6911Chr05:13465131..13465155 (25 bp)
GTATGATGTACATTCTGCCACTGGG
LOC_Os05g23620
Os.10952.1.S1_at--599--7871Chr05:13465107..13465131 (25 bp)
GGTTTCCCATGCCTAGAATTTTCTG
LOC_Os05g23620
Os.10952.1.S1_at--683--10631Chr05:13465104..13465128 (25 bp)
TTCCCATGCCTAGAATTTTCTGTTT
LOC_Os05g23620
Os.10952.1.S1_at--974--9571Chr05:13465079..13465103 (25 bp)
TCTTCCTCTGCTGCAAAAGCATTTT
LOC_Os05g23620
Os.10952.1.S1_at--562--9491Chr05:13465073..13465097 (25 bp)
TCTGCTGCAAAAGCATTTTCTTCAT
LOC_Os05g23620
Os.10952.1.S1_at--892--10371Chr05:13465058..13465082 (25 bp)
TTTTCTTCATGGGAGCACTTGCAAT
LOC_Os05g23620
Target Sequence 
TGTTGTCAACTGAGGGACCACTGTTTCTTACTTTCATTAAAATGTTTTGAGCATTTAAGCGGAAGCATTTCAAATAATGA
GTATGATGTACATTCTGCCACTGGGGTTTCCCATGCCTAGAATTTTCTGTTTTCTTCCTCTGCTGCAAAAGCATTTTCTT
CATGGGAGCACTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis