Browse Element(s) Details


Os.51753.1.A1_at

Description gb:AK063610.1
DB_XREF= gi:32973628
TID=Os.51753.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D03, full insert sequence.
FL= gb:AK063610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3534011/11Glutaredoxin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein
LOC_Os12g35340Os.51753.1.A1_at11/1112+21446659..21447622Glutaredoxin-like family protein, expressed
LOC_Os12g35350Os.47924.1.S1_at11/1112+21454591..21460247Kelch motif family protein, expressed
LOC_Os12g35360Os.7208.1.S1_at11/1112+21460372..21467391vesicle tethering family protein, putative, expressed
LOC_Os12g35364OsAffx.14791.1.S1_at1/1112+21470164..21470771hypothetical protein
LOC_Os12g35370OsAffx.22421.2.S1_at3/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.4.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370Os.26886.3.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.1.S1_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51753.1.A1_at--848--211Chr12:21447092..21447116 (25 bp)
ATTTGGCTCTAGATCGCTCATCATA
LOC_Os12g35340
Os.51753.1.A1_at--957--2511Chr12:21447148..21447172 (25 bp)
AACTTCACTGTTTTAATCGCTACTA
LOC_Os12g35340
Os.51753.1.A1_at--327--9731Chr12:21447161..21447185 (25 bp)
TAATCGCTACTACATTCGTTTTAAA
LOC_Os12g35340
Os.51753.1.A1_at--169--5091Chr12:21447287..21447311 (25 bp)
GCACCTTTGTATTGCATGCACGTGT
LOC_Os12g35340
Os.51753.1.A1_at--811--931Chr12:21447321..21447345 (25 bp)
AGGCACACATACGAGTTTACCACTT
LOC_Os12g35340
Os.51753.1.A1_at--1092--6811Chr12:21447335..21447359 (25 bp)
GTTTACCACTTACGCGAGTGACTGA
LOC_Os12g35340
Os.51753.1.A1_at--317--2011Chr12:21447409..21447433 (25 bp)
ACTCACCTGAGGACTGCCAATATTT
LOC_Os12g35340
Os.51753.1.A1_at--406--8871Chr12:21447461..21447485 (25 bp)
TGAGTGAGTTTTGCCGCTAGCTAGC
LOC_Os12g35340
Os.51753.1.A1_at--999--911Chr12:21447551..21447575 (25 bp)
AGGCTTTAATGTTATCCCTCTCCAG
LOC_Os12g35340
Os.51753.1.A1_at--573--3671Chr12:21447578..21447602 (25 bp)
CTTTTTTCCAATGAGAGCTGTGTTT
LOC_Os12g35340
Os.51753.1.A1_at--816--1611Chr12:21447593..21447617 (25 bp)
AGCTGTGTTTTGTAACCTCGTGATC
LOC_Os12g35340
Target Sequence 
ATTTGGCTCTAGATCGCTCATCATAATTAAGCTCAATTAATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACT
ACATTCGTTTTAAAATATAAAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTAT
ATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTGTGTAAAAAAAAGGCACACATA
CGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATATATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACT
CACCTGAGGACTGCCAATATTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAAC
TAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAATAGGCTTTAATGTTATCCCTCT
CCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCTCGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51753.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis