Browse Element(s) Details


Os.11007.1.S1_at

Description gb:AK059316.1
DB_XREF= gi:32969334
TID=Os.11007.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full insert sequence.
FL= gb:AK059316.1 gb:AK104287.1 gb:AK069502.1 gb:AK104170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3532010/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35270Os.15984.1.S1_at11/1112+21396182..21398248expressed protein
LOC_Os12g35280NANA12+21398970..21405377retrotransposon protein, putative, unclassified
LOC_Os12g35290Os.15282.1.S1_at11/1112+21407866..21414262Dor1-like family protein, expressed
LOC_Os12g35299NANA12+21417306..21417548NA
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed
LOC_Os12g35330OsAffx.7795.1.S1_at11/1112+21435691..21436002Glutaredoxin-like family protein
LOC_Os12g35340Os.51753.1.A1_at11/1112+21446659..21447622Glutaredoxin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11007.1.S1_at--884--3211NONE
CAAGGTTTGGGTGCTCTGTAATGAC
NONE
Os.11007.1.S1_at--459--8531Chr12:21425957..21425981 (25 bp)
TGGACTTCCATGTGATTGGCCACAA
LOC_Os12g35320
Os.11007.1.S1_at--629--5671Chr12:21426015..21426039 (25 bp)
GACATCACGGCCTGCGGATTTATCA
LOC_Os12g35320
Os.11007.1.S1_at--172--11Chr12:21426065..21426089 (25 bp)
ATTCGTCCGAAAACAATCCGTAGAT
LOC_Os12g35320
Os.11007.1.S1_at--278--351Chr12:21426088..21426112 (25 bp)
ATAACATGCCATGTTGGTGCCCAAC
LOC_Os12g35320
Os.11007.1.S1_at--949--7771Chr12:21426103..21426127 (25 bp)
GGTGCCCAACAAGATCTACAGTTTA
LOC_Os12g35320
Os.11007.1.S1_at--456--5491Chr12:21426170..21426194 (25 bp)
GAACATTGTTTTGCGGCTAGCCTAT
LOC_Os12g35320
Os.11007.1.S1_at--985--1131Chr12:21426198..21426222 (25 bp)
AGTGCCTACCCAATTCTTCAAGATT
LOC_Os12g35320
Os.11007.1.S1_at--370--5251Chr12:21426300..21426324 (25 bp)
GAATCTTTAATCACAGCCATGGCTG
LOC_Os12g35320
Os.11007.1.S1_at--656--5551Chr12:21426345..21426369 (25 bp)
GAAACCCATCATGTTATCCAGGAGC
LOC_Os12g35320
Os.11007.1.S1_at--506--7691Chr12:21426401..21426425 (25 bp)
GGGTATGCGTACTCTACATGTTGAT
LOC_Os12g35320
Target Sequence 
CAAGGTTTGGGTGCTCTGTAATGACTGCAACAAGGTCTCAGAAGTGGACTTCCATGTGATTGGCCACAAGTGCAGCCNCT
GCAACTCGTACAATACTCGATCGACATCACGGCCTGCGGATTTATCAGGAAGCAGTTCTCCCTCGACGTCAGATTCGTCC
GAAAACAATCCGTAGATAACATGCCATGTTGGTGCCCAACAAGATCTACAGTTTAGACAATCAAGTCCCAGATTCATACA
TATACAAGTAGTAGAAGGAACATTGTTTTGCGGCTAGCCTATCCAAGTGCCTACCCAATTCTTCAAGATTCAATTGATTC
CTTGAATCTTCATGTGTTGGAACTGCTACTAGACAAAAGCTATTGTGATGATACCATATGTTGTGTTGAATCTTTAATCA
CAGCCATGGCTGTTATCAGTGTGGGTGAAAGTGAAACCCATCATGTTATCCAGGAGCTGAATGTTGATGATTGCAATCCA
TGGAAAATGGGTATGCGTACTCTACATGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis