Browse Element(s) Details


Os.15984.1.S1_at

Description gb:AK109170.1
DB_XREF= gi:32994379
TID=Os.15984.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H05, full insert sequence.
FL= gb:AK109170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3527011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35209NANA12+21372374..21375033transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35220Os.40626.2.S1_x_at9/1112+21376254..21379923hAT family dimerisation domain containing protein
LOC_Os12g35220Os.40626.1.S1_at4/1112+21376254..21379923hAT family dimerisation domain containing protein
LOC_Os12g35230NANA12+21380244..21381083hypothetical protein
LOC_Os12g35239NANA12+21383036..21385695transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35250Os.40626.2.S1_x_at10/1112+21386916..21390586hAT family dimerisation domain containing protein
LOC_Os12g35250Os.40626.1.S1_at3/1112+21386916..21390586hAT family dimerisation domain containing protein
LOC_Os12g35260NANA12+21393897..21394676hypothetical protein
LOC_Os12g35270Os.15984.1.S1_at11/1112+21396182..21398248expressed protein
LOC_Os12g35280NANA12+21398970..21405377retrotransposon protein, putative, unclassified
LOC_Os12g35290Os.15282.1.S1_at11/1112+21407866..21414262Dor1-like family protein, expressed
LOC_Os12g35299NANA12+21417306..21417548NA
LOC_Os12g35310OsAffx.32034.1.S1_at11/1112+21420706..21422281hypothetical protein
LOC_Os12g35320Os.11007.1.S1_at10/1112+21422854..21426502CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15984.1.S1_at--703--7031Chr12:21396960..21396984 (25 bp)
GTACAAGAGGTCAAAGAAGCAACAA
LOC_Os12g35270
Os.15984.1.S1_at--1071--2891Chr12:21396665..21396689 (25 bp)
AAGGAGGTGATGATGCAAACAATGC
LOC_Os12g35270
Os.15984.1.S1_at--168--4971Chr12:21396642..21396666 (25 bp)
GCATCAAAGCTGCATAGCAAGAAGA
LOC_Os12g35270
Os.15984.1.S1_at--209--5591Chr12:21396433..21396457 (25 bp)
GAAATACAGGATCCAGCATCTGTTG
LOC_Os12g35270
Os.15984.1.S1_at--728--4351Chr12:21396421..21396445 (25 bp)
CCAGCATCTGTTGGAGACTGCATTA
LOC_Os12g35270
Os.15984.1.S1_at--729--5711Chr12:21396406..21396430 (25 bp)
GACTGCATTAGAAAGCTCAAACAAG
LOC_Os12g35270
Os.15984.1.S1_at--1011--3871Chr12:21396316..21396340 (25 bp)
CTGTTTGTTTCAACTGGCTTCTGTA
LOC_Os12g35270
Os.15984.1.S1_at--779--10331Chr12:21396309..21396333 (25 bp)
TTTCAACTGGCTTCTGTAACTCTAG
LOC_Os12g35270
Os.15984.1.S1_at--602--8491Chr12:21396302..21396326 (25 bp)
TGGCTTCTGTAACTCTAGCACTCTA
LOC_Os12g35270
Os.15984.1.S1_at--816--7051Chr12:21396294..21396318 (25 bp)
GTAACTCTAGCACTCTACCATGTAA
LOC_Os12g35270
Os.15984.1.S1_at--91--1491Chr12:21396286..21396310 (25 bp)
AGCACTCTACCATGTAAATCTTTGG
LOC_Os12g35270
Target Sequence 
GTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGATGATG
CAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGNGTTGCNCCAAGCTTAANACGAAGAGTATGAGAAAAAACG
NGCAGAGGATGAGAAGGCANAAGAAGGAGCGGGAAGCGATAATTCAGNCAAAGAGGGAGGANCGGGAGAGGTCTGAAGCA
AGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCANGCCTGTGATGAAATACAGGATCCAGCATC
TGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACNAAAATGCTGTACTGATTGCTATAANCAAATTTTG
TAGATCAATGCAGTGNCCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis