Browse Element(s) Details


OsAffx.16883.1.S1_x_at

Description tigr:9636.m00714
TID=OsAffx.16883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0773011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16883.1.S1_x_at--712--8991Chr08:4322826..4322850 (25 bp)
TGAAGCAGCGCATCGTCGTCGCCGG
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--54--4571Chr08:4322894..4322918 (25 bp)
GCGCTGGCGTGGGTGTCGTTCGTCC
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--324--7211Chr08:4322908..4322932 (25 bp)
GTCGTTCGTCCGGAGCAAGCACGCG
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--420--1871Chr08:4322955..4322979 (25 bp)
ACGAGGTGTACCTCTTCTTCTTCAT
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--444--7591Chr08:4323025..4323049 (25 bp)
GGGCTTCTTCGGCACGTGCATCTCC
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--963--8011Chr08:4323151..4323175 (25 bp)
GGAGGACCCGCTCGCCGGCTGGGAG
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--1090--4131Chr08:4323201..4323225 (25 bp)
CGCTGAGCCGGCTGGTGAACATGTC
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--218--5751Chr08:4323286..4323310 (25 bp)
GACGGAGTTGGTGACGATGAACCAT
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--900--3931Chr08:4323343..4323367 (25 bp)
CGGCGGTGTGCAGGCGTCGGTGTCG
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--868--9431Chr08:4323359..4323383 (25 bp)
TCGGTGTCGATGAAGCCGGAGCACA
LOC_Os08g07730
OsAffx.16883.1.S1_x_at--994--5411Chr08:4323370..4323394 (25 bp)
GAAGCCGGAGCACATGGACAAGTTC
LOC_Os08g07730
Target Sequence 
TGAAGCAGCGCATCGTCGTCGCCGGCGCCGGCGGCCTCACGCCGCCGTCCGGCTTCGTGGCGCTCGCGGCGCTGGCGTGG
GTGTCGTTCGTCCGGAGCAAGCACGCGGCGGGCGCCATCGCCGCCGGCGACGAGGTGTACCTCTTCTTCTTCATCGACTG
CCGCGGCCGCCGCGCCGCGTTCGACCCGCCGGTGGGGGAGGGCTTCTTCGGCACGTGCATCTCCGGCTGCCTCGCCACGG
CCACCGCGCGGGACCTGCTCGGCGGCGGCGACGGCGGGCTGGTCGCCGCCGCCAGGGCCGTGCAGGAGGAGGTGCGGCGA
GCGGCGGAGGACCCGCTCGCCGGCTGGGAGTGGATGTCGCTGGTGGGGCGGATCGCGCTGAGCCGGCTGGTGAACATGTC
GGGGTCGACGAGGTTCCCGGCGTACGAGGCGGCGGACTTCGGGTGGGGCTCGCCGAGCCGGACGGAGTTGGTGACGATGA
ACCATGGCGGGCAGGTGGTGCTCGTCGCCGCCAAGGGCGGCGGTGTGCAGGCGTCGGTGTCGATGAAGCCGGAGCACATG
GACAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16883.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis