Browse Element(s) Details


Os.51406.1.S1_at

Description gb:AK062724.1
DB_XREF= gi:32972742
TID=Os.51406.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D07, full insert sequence.
FL= gb:AK062724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g076909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51406.1.S1_at--409--6911Chr08:4294280..4294304 (25 bp)
GTAGTCTTACTTCTTCCAAGCAATC
NONE
Os.51406.1.S1_at--415--9111Chr08:4294429..4294453 (25 bp)
TGCTGCGTCAGGTCGTCCATGGCTT
LOC_Os08g07690
Os.51406.1.S1_at--427--8971Chr08:4294495..4294519 (25 bp)
TGAAACCATCTGCAGCTCCGAAACA
LOC_Os08g07690
Os.51406.1.S1_at--279--211Chr08:4294535..4294559 (25 bp)
ATTTGCCGTCAATAACACTGCTGCG
LOC_Os08g07690
Os.51406.1.S1_at--13--3931Chr08:4294879..4294903 (25 bp)
CTGGCCTTTAGCTTCAATCGATGCA
LOC_Os08g07690
Os.51406.1.S1_at--529--6391Chr08:4294919..4294943 (25 bp)
GATCGACGCGATCATTATGTACAAT
LOC_Os08g07690
Os.51406.1.S1_at--42--9791Chr08:4294946..4294970 (25 bp)
TAAGTTCGGGTAATCCATGCATGGA
LOC_Os08g07690
Os.51406.1.S1_at--1134--631Chr08:4294962..4294986 (25 bp)
ATGCATGGATTACTGTTCTTCGAAC
LOC_Os08g07690
Os.51406.1.S1_at--696--6811Chr08:4294977..4295001 (25 bp)
TTCTTCGAACCGAGCAGTGGCTTTG
LOC_Os08g07690
Os.51406.1.S1_at--497--6291Chr08:4295001..4295025 (25 bp)
GATGATTTGTTACCCTGACTGTACG
LOC_Os08g07690
Os.51406.1.S1_at--1072--191Chr08:4295050..4295074 (25 bp)
ATTTGCACTCACAGATTTAACCATG
NONE
Target Sequence 
GTAGTCTTACTTCTTCCAAGCAATCTGAAGTCTGAACCTTAGAATGGATCAGAAGGATTAGCTGCAGATGAAGGAGAATA
CATTCCAGGAAGGAACAGCCATGGCGTCGTCCTCCTCATCATCGTCCTTTCTCGCTCATCCATCGTCGCTGCTGCGTCAG
GTCGTCCATGGCTTCGCCGGCTACCTCGCCGGCCTCTGCCGTTCTCTCCAGAATCTGAAACCATCTGCAGCTCCGAAACA
AGACGCTGACGACGAATTTGCCGTCAATAACACTGCTGCGTCAAGCTCCGAAGAAGTTGAGAATGTTCAGATGAAAAGGC
GGAGCACACCACAACGCTGGCCTTTAGCTTCAATCGATGCAAAGCTTTGATCGATCGATCGACGCGATCATTATGTACAA
TAATAAGTTCGGGTAATCCATGCATGGATTACTGTTCTTCGAACCGAGCAGTGGCTTTGATGATTTGTTACCCTGACTGT
ACGAGGAAAATATCAAGTGGAAATAAAATTTGCACTCACAGATTTAACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis