Browse Element(s) Details


OsAffx.5738.1.S1_at

Description tigr:9636.m00703
TID=OsAffx.5738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0762011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5738.1.S1_at--598--5051Chr08:4272153..4272177 (25 bp)
GCAGCAATGGACACTACTCCGAGAC
LOC_Os08g07620
OsAffx.5738.1.S1_at--606--3411Chr08:4272154..4272178 (25 bp)
CAGCAATGGACACTACTCCGAGACA
LOC_Os08g07620
OsAffx.5738.1.S1_at--12--1491Chr08:4272155..4272179 (25 bp)
AGCAATGGACACTACTCCGAGACAA
LOC_Os08g07620
OsAffx.5738.1.S1_at--1071--5171Chr08:4272156..4272180 (25 bp)
GCAATGGACACTACTCCGAGACAAG
LOC_Os08g07620
OsAffx.5738.1.S1_at--1003--2951Chr08:4272158..4272182 (25 bp)
AATGGACACTACTCCGAGACAAGGC
LOC_Os08g07620
OsAffx.5738.1.S1_at--981--4071Chr08:4272172..4272196 (25 bp)
CGAGACAAGGCGGAGTGCTCCTGGA
LOC_Os08g07620
OsAffx.5738.1.S1_at--185--1131Chr08:4272185..4272209 (25 bp)
AGTGCTCCTGGAGATGAGGCCTAGA
LOC_Os08g07620
OsAffx.5738.1.S1_at--1012--9091Chr08:4272187..4272211 (25 bp)
TGCTCCTGGAGATGAGGCCTAGAGG
LOC_Os08g07620
OsAffx.5738.1.S1_at--812--4471Chr08:4272245..4272269 (25 bp)
GCCGGCCGGTCCGAGAGAAGGGCGC
LOC_Os08g07620
OsAffx.5738.1.S1_at--1072--8611Chr08:4272277..4272301 (25 bp)
TGGTGGTCGTCCATGCGGTGGCGAG
LOC_Os08g07620
OsAffx.5738.1.S1_at--146--7291Chr08:4272279..4272303 (25 bp)
GTGGTCGTCCATGCGGTGGCGAGGG
LOC_Os08g07620
Target Sequence 
GCAGCAATGGACACTACTCCGAGACAAGGCGGAGTGCTCCTGGAGATGAGGCCTAGAGGAGGAGGTGGGGGAGCTCCCCG
GAGGCCGGCGCCGCCGGCCGGTCCGAGAGAAGGGCGCGGCGGAGTGGTGGTCGTCCATGCGGTGGCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis