Browse Element(s) Details


OsAffx.29085.1.S1_at

Description tigr:9636.m00706
TID=OsAffx.29085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0765011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29085.1.S1_at--708--10571Chr08:4282931..4282955 (25 bp)
TTCTCCGGCGTTTTCCTCAGTTCAC
LOC_Os08g07650
OsAffx.29085.1.S1_at--326--6811Chr08:4282940..4282964 (25 bp)
GTTTTCCTCAGTTCACCACATGCCA
LOC_Os08g07650
OsAffx.29085.1.S1_at--1038--9031Chr08:4282970..4282994 (25 bp)
TGCAGCTGGTCCTATACCCTTACTG
LOC_Os08g07650
OsAffx.29085.1.S1_at--1111--8591Chr08:4282976..4282997 (22 bp)
TGGTCCTATACCCTTACTGCAGCAG
LOC_Os08g07650
OsAffx.29085.1.S1_at--94--1591Chr08:4283067..4283091 (25 bp)
AGCTCATGCCGGCATCAGCAGCGTC
LOC_Os08g07650
OsAffx.29085.1.S1_at--374--1431Chr08:4283105..4283129 (25 bp)
AGAACAGCAGCATGCTAGTCTTCGT
LOC_Os08g07650
OsAffx.29085.1.S1_at--1007--1511Chr08:4283110..4283134 (25 bp)
AGCAGCATGCTAGTCTTCGTGTCCA
LOC_Os08g07650
OsAffx.29085.1.S1_at--1058--1531Chr08:4283113..4283137 (25 bp)
AGCATGCTAGTCTTCGTGTCCAGCT
LOC_Os08g07650
OsAffx.29085.1.S1_at--715--3931Chr08:4283139..4283163 (25 bp)
CGGCGGCACCCATGGGCAGGGCAAG
LOC_Os08g07650
OsAffx.29085.1.S1_at--146--3431Chr08:4283187..4283211 (25 bp)
CAGAGCCGGCGAAGTTGCTGGCAGC
LOC_Os08g07650
OsAffx.29085.1.S1_at--778--3911Chr08:4283204..4283228 (25 bp)
CTGGCAGCGGCGAGAGCGAGACAGA
LOC_Os08g07650
Target Sequence 
TTCTCCGGCGTTTTCCTCAGTTCACCACATGCCACCTCCTGCAGCTGGTCCTATACCCTTACTGCAGCAGCTCATGCCGG
CATCAGCAGCGTCCCCATCACCACCAAGAACAGCAGCATGCTAGTCTTCGTGTCCAGCTCCGGCGGCACCCATGGGCAGG
GCAAGGAGGCGGCGAGTGCGCAGGAGGGCAGAGCCGGCGAAGTTGCTGGCAGCGGCGAGAGCGAGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis