Browse Element(s) Details


OsAffx.29083.1.S1_at

Description tigr:9636.m00699
TID=OsAffx.29083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29083.1.S1_at--204--8051Chr08:4251714..4251738 (25 bp)
GGAGACTCATTCACGTACTGGACAC
LOC_Os08g07580
OsAffx.29083.1.S1_at--659--5632Chr08:4251183..4251207 (25 bp)
GACACTAAAGCAGTCCACAACTTGG
NONE
OsAffx.29083.1.S1_at--1095--6792Chr08:4251207..4251231 (25 bp)
GTTTTGTTACCGCATACCAAGTTGC
NONE
OsAffx.29083.1.S1_at--315--9992Chr08:4251221..4251245 (25 bp)
TACCAAGTTGCTCGACATCTCTCTA
NONE
OsAffx.29083.1.S1_at--1077--9851Chr08:4251576..4251657 (25 bp)
TACAGCAGAGGTTCTCCAGGCGCGG
LOC_Os08g07580
OsAffx.29083.1.S1_at--223--2372Chr08:4251546..4251570 (25 bp)
AAAGCCAGCCTGATGAGATCCTAAA
LOC_Os08g07580
OsAffx.29083.1.S1_at--860--312Chr08:4251501..4251525 (25 bp)
ATACGGTGGCCTATGCTGGTCAGAA
LOC_Os08g07580
OsAffx.29083.1.S1_at--1141--5312Chr08:4251479..4251503 (25 bp)
GAAGTGGTGCACACTGGGCTTCCCA
LOC_Os08g07580
OsAffx.29083.1.S1_at--1150--9991Chr08:4251364..4251462 (25 bp)
TAGCTACGGCTGCTTCTTCTGTTCA
LOC_Os08g07580
OsAffx.29083.1.S1_at--825--9591Chr08:4251342..4251366 (25 bp)
TCATTGTCTGTGTACCCGTGAGAGT
LOC_Os08g07580
OsAffx.29083.1.S1_at--1162--8891Chr08:4251324..4251348 (25 bp)
TGAGAGTACGCTCACACCCATAGGC
LOC_Os08g07580
Target Sequence 
GGAGACTCATTCACGTACTGGACACTAAAGCAGTCCACAACTTGGTTTTGTTACCGCATACCAAGTTGCTCGACATCTCT
CTACAGCAGAGGTTCTCCAGGCGCGGCCCACAAAGCCAGCCTGATGAGATCCTAAAGGACGAAACAGGGACTGCAGATAC
GGTGGCCTATGCTGGTCAGAAGTGGTGCACACTGGGCTTCCCAGTCACTCCCATGTTCCTAGCTACGGCTGCTTCTTCTG
TTCATTGTCTGTGTACCCGTGAGAGTACGCTCACACCCATAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis