Browse Element(s) Details


Os.6294.1.S1_at

Description gb:AK101266.1
DB_XREF= gi:32986475
TID=Os.6294.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032L11, full insert sequence.
FL= gb:AK101266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0754011/11hemimethylated DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006289biological_processnucleotide-excision repair
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6294.1.S1_at--1160--3351Chr08:4235782..4235806 (25 bp)
CACCGACTGAGTTCCGAAATGGTGG
LOC_Os08g07540
Os.6294.1.S1_at--371--6171Chr08:4235806..4235830 (25 bp)
GAGGAGCTTGACAGCTTGTTACTAT
LOC_Os08g07540
Os.6294.1.S1_at--1052--8071Chr08:4235808..4235832 (25 bp)
GGAGCTTGACAGCTTGTTACTATCT
LOC_Os08g07540
Os.6294.1.S1_at--37--5571Chr08:4236173..4236197 (25 bp)
GAAAGTTGGAATATACTTACGTGGA
LOC_Os08g07540
Os.6294.1.S1_at--748--5211Chr08:4236181..4236205 (25 bp)
GAATATACTTACGTGGAAAACTGCA
LOC_Os08g07540
Os.6294.1.S1_at--983--10151Chr08:4236184..4236208 (25 bp)
TATACTTACGTGGAAAACTGCAAAC
LOC_Os08g07540
Os.6294.1.S1_at--586--9871Chr08:4236186..4236210 (25 bp)
TACTTACGTGGAAAACTGCAAACCA
LOC_Os08g07540
Os.6294.1.S1_at--478--9891Chr08:4236190..4236214 (25 bp)
TACGTGGAAAACTGCAAACCACAGA
LOC_Os08g07540
Os.6294.1.S1_at--1031--2351Chr08:4236205..4236229 (25 bp)
AAACCACAGAATTTTTGACGCTCGG
LOC_Os08g07540
Os.6294.1.S1_at--1104--2631Chr08:4236206..4236230 (25 bp)
AACCACAGAATTTTTGACGCTCGGG
LOC_Os08g07540
Os.6294.1.S1_at--28--3311Chr08:4236209..4236233 (25 bp)
CACAGAATTTTTGACGCTCGGGGAA
LOC_Os08g07540
Target Sequence 
CACCGACTGAGTTCCGAAATGGTGGAGGAGCTTGACAGCTTGTTACTATCTGATGTAACTACAGCGGGCTAATGTCAGTG
AAGACTGGTGACTGGGCTAACCTGGAACCTGAACAATCCACAGCAATCTGCAATGAGGCAATCTGCATTTGATATATTGA
TATCTGACCTTGCAGATTCACGATTGAGGNATAACACCCATATAGTGGCCAATCCATGAAGCCCTTTACATATACGGTTC
TAAAGAAGATCCTTGTGGATTTGCAGTCTGTACTTCCCCAAGTTCTTCTGTAACTGTGTTCCCTCTGATGGGAATTTTGT
AGATAAGCTGCATTCATCAAACCTGCAACTCTGCAGCTGCAGAGAAAGCAAAGGGTTGACGNTACATCTATTGGAAAGTT
GGAATATACTTACGTGGAAAACTGCAAACCACAGAATTTTTGACGCTCGGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis