Browse Element(s) Details


Os.49673.1.S1_at

Description gb:AK068909.1
DB_XREF= gi:32978934
TID=Os.49673.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003M02, full insert sequence.
FL= gb:AK068909.1 gb:AK100902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0750011/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07460NANA8+4177780..4180707transposon protein, putative, unclassified
LOC_Os08g07470NANA8+4183160..4183896hypothetical protein
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07490OsAffx.16877.1.S1_at8/118+4200074..4201570expressed protein
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49673.1.S1_at--1112--1051Chr08:4205665..4205689 (25 bp)
AGGTGGCCTACATGCGCGGCTGCTT
LOC_Os08g07500
Os.49673.1.S1_at--1045--431Chr08:4205558..4205582 (25 bp)
ATCTTCTTCGTCAGGCTATGACCAC
LOC_Os08g07500
Os.49673.1.S1_at--110--4491Chr08:4205510..4205534 (25 bp)
GCCGGCGATGCACCGATCAATCCAT
LOC_Os08g07500
Os.49673.1.S1_at--1098--7171Chr08:4205440..4205464 (25 bp)
GTCGTGATTCGTGCAGCCCTCTTGA
LOC_Os08g07500
Os.49673.1.S1_at--820--6171Chr08:4205399..4205423 (25 bp)
GAGGAGCAGGCGAGCCACCTCGACT
LOC_Os08g07500
Os.49673.1.S1_at--499--5711Chr08:4205378..4205402 (25 bp)
GACTCCCTACGTCAGAGATGGCTTA
LOC_Os08g07500
Os.49673.1.S1_at--909--9751Chr08:4205325..4205349 (25 bp)
TAATCTTGTGCTCTTAGTGGGTGAT
LOC_Os08g07500
Os.49673.1.S1_at--604--8011Chr08:4205290..4205314 (25 bp)
GGAGGTCATTGCATAAATCGGGTTT
LOC_Os08g07500
Os.49673.1.S1_at--862--10311Chr08:4205268..4205292 (25 bp)
TTTAATGGTGGTGCCCAACACCTCA
LOC_Os08g07500
Os.49673.1.S1_at--340--2171Chr08:4205251..4205275 (25 bp)
ACACCTCATTGCACACACAATCTAG
LOC_Os08g07500
Os.49673.1.S1_at--23--10591Chr08:4205174..4205198 (25 bp)
TTCTCTCTCGCGTTTAATTATCGGA
LOC_Os08g07500
Target Sequence 
AGGTGGCCTACATGCGCGGCTGCTTCGACCACTTCGTCGGCTCGCGCGACTCCGAGTCGCTCTACATGATCGCGCCCCAG
GGCGGCGGCACCGGCCCGGAGCTCGCCATCTTCTTCGTCAGGCTATGACCACCACCACCACCTACTCGCCGGCTCGCCGG
CGATGCACCGATCAATCCATCGCCACCGCCATCGCGCGCGCCATGCAAAGCAAGACGAAGGGCGCGTCGTGATTCGTGCA
GCCCTCTTGACGGCCTCGAGATTCGTGAGGAGCAGGCGAGCCACCTCGACTCCCTACGTCAGAGATGGCTTAGCTTAAAT
TTAATCATCTGATTAAGCACTAATCTTGTGCTCTTAGTGGGTGATTAGGTTGTGAGGAGGTCATTGCATAAATCGGGTTT
AATGGTGGTGCCCAACACCTCATTGCACACACAATCTAGTGGAGTACGGAGAAAATTATATTAATTAATTAAGTTGCTTG
CNTTTGCTTTCTTCTCTCTCGCGTTTAATTATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis