Browse Element(s) Details


OsAffx.16877.1.S1_at

Description tigr:9636.m00687
TID=OsAffx.16877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g074908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07460NANA8+4177780..4180707transposon protein, putative, unclassified
LOC_Os08g07470NANA8+4183160..4183896hypothetical protein
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07490OsAffx.16877.1.S1_at8/118+4200074..4201570expressed protein
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16877.1.S1_at--398--2831Chr08:4201406..4201430 (25 bp)
AAGTTCTGCGGCCTCATCGGCCGCA
LOC_Os08g07490
OsAffx.16877.1.S1_at--709--8411Chr08:4201388..4201412 (25 bp)
GGCCGCATCACCAGCTGTGGCCGCG
LOC_Os08g07490
OsAffx.16877.1.S1_at--1105--2211NONE
ACAAGGACGCCGCACACAGAGATAA
NONE
OsAffx.16877.1.S1_at--926--2911NONE
AAGGACGCCGCACACAGAGATAAGG
NONE
OsAffx.16877.1.S1_at--490--8091NONE
GGACGCCGCACACAGAGATAAGGTC
NONE
OsAffx.16877.1.S1_at--162--7631Chr08:4200583..4200607 (25 bp)
GGGACTTCCACCGTCTGTGTCAGGA
LOC_Os08g07490
OsAffx.16877.1.S1_at--74--2051Chr08:4200580..4200604 (25 bp)
ACTTCCACCGTCTGTGTCAGGAGGG
LOC_Os08g07490
OsAffx.16877.1.S1_at--919--10671Chr08:4200578..4200602 (25 bp)
TTCCACCGTCTGTGTCAGGAGGGTC
LOC_Os08g07490
OsAffx.16877.1.S1_at--363--3351Chr08:4200575..4200599 (25 bp)
CACCGTCTGTGTCAGGAGGGTCCAA
LOC_Os08g07490
OsAffx.16877.1.S1_at--1106--7151Chr08:4200571..4200595 (25 bp)
GTCTGTGTCAGGAGGGTCCAAGCCC
LOC_Os08g07490
OsAffx.16877.1.S1_at--526--9471Chr08:4200570..4200594 (25 bp)
TCTGTGTCAGGAGGGTCCAAGCCCC
LOC_Os08g07490
Target Sequence 
AAGTTCTGCGGCCTCATCGGCCGCATCACCAGCTGTGGCCGCGCCGCCCACAAGGACGCCGCACACAGAGATAAGGTCAA
GGGGACTTCCACCGTCTGTGTCAGGAGGGTCCAAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis