Browse Element(s) Details


OsAffx.16878.1.S1_at

Description tigr:9636.m00690
TID=OsAffx.16878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07490OsAffx.16877.1.S1_at8/118+4200074..4201570expressed protein
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16878.1.S1_at--258--991Chr08:4213802..4213826 (25 bp)
AGGAGGTCGCGAGCATGGGTCCCGA
LOC_Os08g07520
OsAffx.16878.1.S1_at--954--1031Chr08:4213799..4213823 (25 bp)
AGGTCGCGAGCATGGGTCCCGATGA
LOC_Os08g07520
OsAffx.16878.1.S1_at--277--791Chr08:4213788..4213812 (25 bp)
ATGGGTCCCGATGAGGTCGTCGCGC
LOC_Os08g07520
OsAffx.16878.1.S1_at--110--1871Chr08:4213760..4213784 (25 bp)
ACGAGCGGCTGCGATCGCTCAGGCT
LOC_Os08g07520
OsAffx.16878.1.S1_at--168--1631Chr08:4213757..4213781 (25 bp)
AGCGGCTGCGATCGCTCAGGCTCCT
LOC_Os08g07520
OsAffx.16878.1.S1_at--444--9151Chr08:4213751..4213775 (25 bp)
TGCGATCGCTCAGGCTCCTCGTGAT
LOC_Os08g07520
OsAffx.16878.1.S1_at--336--6391Chr08:4213748..4213772 (25 bp)
GATCGCTCAGGCTCCTCGTGATGCG
LOC_Os08g07520
OsAffx.16878.1.S1_at--343--9351Chr08:4213746..4213770 (25 bp)
TCGCTCAGGCTCCTCGTGATGCGGA
LOC_Os08g07520
OsAffx.16878.1.S1_at--545--9631Chr08:4213742..4213766 (25 bp)
TCAGGCTCCTCGTGATGCGGAGGAT
LOC_Os08g07520
OsAffx.16878.1.S1_at--604--911Chr08:4213740..4213764 (25 bp)
AGGCTCCTCGTGATGCGGAGGATCA
LOC_Os08g07520
OsAffx.16878.1.S1_at--248--4791Chr08:4213738..4213762 (25 bp)
GCTCCTCGTGATGCGGAGGATCAAG
LOC_Os08g07520
Target Sequence 
AGGAGGTCGCGAGCATGGGTCCCGATGAGGTCGTCGCGCTCGACGAGCGGCTGCGATCGCTCAGGCTCCTCGTGATGCGG
AGGATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis