Browse Element(s) Details


OsAffx.29087.1.S1_x_at

Description tigr:9636.m00713
TID=OsAffx.29087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0772011/11Transferase family protein, expressed
LOC_Os07g345701/11Thiazole biosynthetic enzyme 1-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006974biological_processresponse to DNA damage stimulus
GO:0009228biological_processthiamin biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29087.1.S1_x_at--1099--4971Chr08:4310384..4310408 (25 bp)
GCATCGACGAGCTCGCCTCGGCGGA
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--604--4131Chr08:4310335..4310359 (25 bp)
CGCCAAGCCGGTGTCGACGTTCGTG
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--656--4631Chr08:4310286..4310310 (25 bp)
GCGTTCGTCCGGTCCAAGGCGCTCG
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--360--7631Chr08:4310255..4310279 (25 bp)
GGGACGACACGTACCTGATCTTCCT
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--124--9971Chr08:4310187..4310211 (25 bp)
TACCTCGGGAACTGCGTGAGGATGT
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--652--6171Chr08:4310170..4310194 (25 bp)
GAGGATGTGCCTGGCGCGCTGCGCC
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--226--6391Chr08:4310032..4310056 (25 bp)
GATCGCGCGGGTGATGCAGATCCCC
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--238--4571Chr08:4310028..4310052 (25 bp)
GCGCGGGTGATGCAGATCCCCTTCT
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--824--3631Chr08:4310008..4310032 (25 bp)
CTTCTCCCGCATGGCGAACGTGGCG
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--176--1571Chr08:4309919..4309943 (25 bp)
AGCTCGTGTCGATGAACCACGACGG
LOC_Os08g07720
OsAffx.29087.1.S1_x_at--1116--8712Chr07:20723568..20724075 (25 bp)
TGTCGATGAACCACGACGGCGAGAT
LOC_Os07g34570
Target Sequence 
GCATCGACGAGCTCGCCTCGGCGGAGGAGGCTGCCGATGGCGGCGGCGCCGCCAAGCCGGTGTCGACGTTCGTGGCGCTG
GCGGCGATGGGGTGGGCGGCGTTCGTCCGGTCCAAGGCGCTCGCCGACGGGGACGACACGTACCTGATCTTCCTCGCCGA
CCTCCGGGCGCGGCTCGACCCCGCCGTCGGCGAGGGGTACCTCGGGAACTGCGTGAGGATGTGCCTGGCGCGCTGCGCCA
ACGCGGCGGAGCTCCGCGGCGAGCGCGGGCTGCTGCGCGCGGCGCGGGCGGTTCAGGCGGCGGTGGCGGAGATGGAGGCG
GCGCCGCTCGCCGGGACGGCGGACGGGTCGGCGATCGCGCGGGTGATGCAGATCCCCTTCTCCCGCATGGCGAACGTGGC
GGCGAGCCCGCGGTTCGGGGCGTACGGCGCCGCCGACTTCGGGTTCGGGAGGCCGGCGCGCGTCGAGCTCGTGTCGATGA
ACCACGACGGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29087.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis