Browse Element(s) Details


Os.15037.2.S1_at

Description gb:AK064462.1
DB_XREF= gi:32974480
TID=Os.15037.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15037 (NCBI UniGene Cluster)
UG_TITLE=MRNA for PolI-like DNA polymerase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G06, full insert sequence.
FL= gb:AK064462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g078409/11polI-like DNA polymerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07800OsAffx.5741.1.S1_at10/118+4359622..4360295hypothetical protein
LOC_Os08g07810OsAffx.29088.1.S1_at10/118+4364678..4366586Strictosidine synthase family protein
LOC_Os08g07820OsAffx.16885.1.S1_at11/118+4371841..4372919hypothetical protein
LOC_Os08g07830Os.27849.1.S1_at11/118+4379424..4382687expressed protein
LOC_Os08g07840Os.15037.1.S1_a_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.1.S2_at11/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_x_at10/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.15037.2.S1_at9/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07840Os.12123.1.S1_x_at2/118+4384706..4394413polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.54720.1.S1_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.1.S1_a_at11/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.12123.1.S1_x_at7/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850Os.15037.2.S1_x_at6/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07850OsAffx.661.1.S1_x_at1/118+4400776..4410901polI-like DNA polymerase, putative, expressed
LOC_Os08g07860OsAffx.32034.1.S1_at11/118+4415086..4416634hypothetical protein
LOC_Os08g07870NANA8+4418641..4423644retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15037.2.S1_at--994--10631Chr08:4386088..4386112 (25 bp)
TTGGTCTATCTTGGGATTGGAAGGT
LOC_Os08g07840
Os.15037.2.S1_at--366--9551Chr08:4386088..4386108 (21 bp)
TCTATCTTGGGATTGGAAGGTTTCT
LOC_Os08g07840
Os.15037.2.S1_at--596--9571Chr08:4385906..4386104 (25 bp)
TCTTGGGATTGGAAGGTTTCTGTTA
LOC_Os08g07840
Os.15037.2.S1_at--397--8151Chr08:4385897..4385917 (21 bp)
TGGAAGGTTTCTGTTAGGGAAGCAA
LOC_Os08g07840
Os.15037.2.S1_at--656--5391Chr08:4385817..4385841 (25 bp)
GAAGCAGAAAGCCTTTGCGCTTGAA
LOC_Os08g07840
Os.15037.2.S1_at--718--5031Chr08:4385814..4385838 (25 bp)
GCAGAAAGCCTTTGCGCTTGAAAAG
LOC_Os08g07840
Os.15037.2.S1_at--216--2651Chr08:4385809..4385833 (25 bp)
AAGCCTTTGCGCTTGAAAAGTGCGA
LOC_Os08g07840
Os.15037.2.S1_at--250--10291Chr08:4385804..4385828 (25 bp)
TTTGCGCTTGAAAAGTGCGAAGTCT
LOC_Os08g07840
Os.15037.2.S1_at--538--10491NONE
TTAAGGAGCTTGGTTAGAGACCACA
NONE
Os.15037.2.S1_at--265--971NONE
AGGAGCTTGGTTAGAGACCACAGTA
NONE
Os.15037.2.S1_at--142--10871Chr08:4384779..4384798 (20 bp)
TTGGTTAGAGACCACAGTAGATACT
LOC_Os08g07840
Target Sequence 
TTGGTCTATCTTGGGATTGGAAGGTTTCTGTTAGGGAAGCAAGGGATACACTCAAACTTTGGTATAGGGATAGAAAGGAA
GTTTCAGCTTGGCAAAAGAAGCAGAAAGCCTTTGCGCTTGAAAAGTGCGAAGTCTACACTTTGCTCGGGCGATCACGCCA
ATTTCCTAATATGACTCATGCGGGTCCTGGTCAAAAGGGTCACGTCGAGCGTGCTGCTATAAATGCACCAGTGCAGGGCA
GTGCAGCAGATGTTGCTATGTGTGCAATGCTTGAGATAGAAAGAAACGCTCGCCTTAAGGAGCTTGGTTAGAGACCACAG
TAGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15037.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis