Browse Element(s) Details


Os.53339.1.S1_a_at

Description gb:AK103290.1
DB_XREF= gi:32988499
TID=Os.53339.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124O22, full insert sequence.
FL= gb:AK103290.1 gb:AK072101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4938011/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53339.1.S1_a_at--122--5431Chr07:29576568..29576592 (25 bp)
GAAGCCATCCCTTCTGTGGATGACA
LOC_Os07g49380
Os.53339.1.S1_a_at--868--6871Chr07:29576599..29576623 (25 bp)
GTATATTCCGTATGCACGGGCCAAT
LOC_Os07g49380
Os.53339.1.S1_a_at--873--1191Chr07:29576722..29576746 (25 bp)
AGTATAATGCATTTGGTCCAGCCCT
LOC_Os07g49380
Os.53339.1.S1_a_at--208--1671Chr07:29576741..29576765 (25 bp)
AGCCCTTCTCAGGTATGATCTCAAA
LOC_Os07g49380
Os.53339.1.S1_a_at--418--2251Chr07:29576763..29576787 (25 bp)
AAATACCTGCCAATGGTTCCTCAAG
LOC_Os07g49380
Os.53339.1.S1_a_at--1130--7891Chr07:29576777..29576801 (25 bp)
GGTTCCTCAAGTTCCTTAGATGGTG
LOC_Os07g49380
Os.53339.1.S1_a_at--342--8311Chr07:29576804..29576828 (25 bp)
GGCTAAACTGGATATGTCGCCATTT
LOC_Os07g49380
Os.53339.1.S1_a_at--662--6691Chr07:29576974..29576998 (25 bp)
GTTCGCGTTACTGACTTAGAGCTAG
LOC_Os07g49380
Os.53339.1.S1_a_at--322--10451Chr07:29576989..29577013 (25 bp)
TTAGAGCTAGGAATGCCCACTGGCC
LOC_Os07g49380
Os.53339.1.S1_a_at--299--5691Chr07:29577023..29577047 (25 bp)
GACTTGTTCGCTGGTCGAGTGAGCA
LOC_Os07g49380
Os.53339.1.S1_a_at--334--3591Chr07:29577075..29577099 (25 bp)
CATTCCGAGGACTGGTTGTGTACTT
LOC_Os07g49380
Target Sequence 
GAAGCCATCCCTTCTGTGGATGACATCAATAGTATATTCCGTATGCACGGGCCAATCATGGAGGGTGCGACTGAAATCAA
CAAGAAATCAAAGATCGCAAGAGTAGTGTTTTCTAAGAGTGCTGATGCTGAACAGGCATATAGCAGTTCGGGAAAGTATA
ATGCATTTGGTCCAGCCCTTCTCAGGTATGATCTCAAATACCTGCCAATGGTTCCTCAAGTTCCTTAGATGGTGCAGGCT
AAACTGGATATGTCGCCATTTGGAGGGAAATGCGTAATGAAGACTGGAGCTAAGGGATCATAAGATGTTCGCGTTACTGA
CTTAGAGCTAGGAATGCCCACTGGCCAGGCCGGACGACTTGTTCGCTGGTCGAGTGAGCAATTTTTTAGGTTTTATCTGG
TTAAATGCATTCCGAGGACTGGTTGTGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53339.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis