Browse Element(s) Details


Os.52204.1.S1_at

Description gb:AK065595.1
DB_XREF= gi:32975613
TID=Os.52204.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026A09, full insert sequence.
FL= gb:AK065595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4941011/11Uncharacterized ACR, YagE family COG1723 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52204.1.S1_at--1094--6571Chr07:29589510..29589534 (25 bp)
GATTCGTACAATTGGAAGTGTCCTT
LOC_Os07g49410
Os.52204.1.S1_at--696--7451Chr07:29589493..29589517 (25 bp)
GTGTCCTTGGTCAGAGTATTGCCCT
LOC_Os07g49410
Os.52204.1.S1_at--1133--10211Chr07:29589477..29589501 (25 bp)
TATTGCCCTTGACTATTATATCCGG
LOC_Os07g49410
Os.52204.1.S1_at--98--5291Chr07:29589362..29589386 (25 bp)
GAATGGTAGCTGAGTTCACGGATAT
LOC_Os07g49410
Os.52204.1.S1_at--981--2751Chr07:29589321..29589345 (25 bp)
AAGACTGGTACCTTCACTATGGAAA
LOC_Os07g49410
Os.52204.1.S1_at--265--5491Chr07:29589272..29589296 (25 bp)
GAAAGGCTAACTCTAACCTGGCAGA
LOC_Os07g49410
Os.52204.1.S1_at--663--1771Chr07:29589257..29589281 (25 bp)
ACCTGGCAGATGTTATTCTCAAGCT
LOC_Os07g49410
Os.52204.1.S1_at--219--5451Chr07:29588691..29588715 (25 bp)
GAACGCAAACTATGCTCAGATTTGG
LOC_Os07g49410
Os.52204.1.S1_at--959--2071Chr07:29588482..29588506 (25 bp)
ACATTCGTTTTCTTCAAGAGATCCT
LOC_Os07g49410
Os.52204.1.S1_at--31--8051Chr07:29588403..29588427 (25 bp)
GGAGATCCTGATATCTGTTTACAAC
LOC_Os07g49410
Os.52204.1.S1_at--438--8511Chr07:29588306..29588330 (25 bp)
TGGCACGAACCACGAATGACACGTT
LOC_Os07g49410
Target Sequence 
GATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTG
AGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGA
AAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAA
CTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTNGGAACCTTGATTTTAAGTTGAAAT
TTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATT
TTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGC
TGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis