Browse Element(s) Details


OsAffx.22588.1.S1_at

Description tigr:9635.m04969
TID=OsAffx.22588.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4914011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49120Os.34729.2.S1_x_at11/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49120Os.34729.1.S1_at9/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49130NANA7+29426729..29427076hypothetical protein
LOC_Os07g49140OsAffx.22588.1.S1_at11/117+29429669..29433278expressed protein
LOC_Os07g49150Os.144.1.S1_at10/117+29434116..2943843726S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49170OsAffx.20387.1.S1_x_at1/117+29445777..29448534retrotransposon protein, putative, unclassified
LOC_Os07g49180Os.25754.2.S1_x_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180Os.25754.2.S1_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180OsAffx.31069.2.S1_x_at1/117+29449162..29452016hypothetical protein
LOC_Os07g49190NANA7+29453786..29454181retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49200OsAffx.5671.1.S1_at11/117+29456857..29457562hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016337biological_processcell-cell adhesion
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0045010biological_processactin nucleation
GO:0051127biological_processpositive regulation of actin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22588.1.S1_at--631--7371Chr07:29432381..29432405 (25 bp)
GTGAGCCTACGGTACAGTCAGACGA
LOC_Os07g49140
OsAffx.22588.1.S1_at--286--9751Chr07:29432496..29432520 (25 bp)
TAATCTCAGGGCCACCACAGAAGGG
LOC_Os07g49140
OsAffx.22588.1.S1_at--158--4451Chr07:29432520..29432544 (25 bp)
GCCTATCTATAGCAATGGACCACAG
LOC_Os07g49140
OsAffx.22588.1.S1_at--766--6591Chr07:29432544..29432568 (25 bp)
GATTGATGTGCACAACTCACTGGAT
LOC_Os07g49140
OsAffx.22588.1.S1_at--941--3331Chr07:29432561..29432585 (25 bp)
CACTGGATCATCCTACTGACAGAGA
LOC_Os07g49140
OsAffx.22588.1.S1_at--837--9811Chr07:29432639..29432663 (25 bp)
TAACAAAGATGAACCCTCCTCCGGT
LOC_Os07g49140
OsAffx.22588.1.S1_at--1149--3951Chr07:29432660..29432684 (25 bp)
CGGTGCCAAGGCCTAAATATTCTAT
LOC_Os07g49140
OsAffx.22588.1.S1_at--38--5471Chr07:29432824..29432848 (25 bp)
GAACGGCTCCAGGTTTGATATATCC
LOC_Os07g49140
OsAffx.22588.1.S1_at--954--2371Chr07:29432894..29433019 (25 bp)
AAACGCCAAGTCTTGCGATCTGAAG
LOC_Os07g49140
OsAffx.22588.1.S1_at--475--1071Chr07:29433089..29433110 (22 bp)
AGGGTTGATCACATTCGTCAGGCTC
LOC_Os07g49140
OsAffx.22588.1.S1_at--232--7111Chr07:29433184..29433206 (23 bp)
GTCAGGCTCACGCAGAAAACTACGA
LOC_Os07g49140
Target Sequence 
GTGAGCCTACGGTACAGTCAGACGAGTCTCCGCCTGAACAACATTCAGAAATACAACCTCAACGAGAAGAAATACACCAA
ACTGGTAATGGAGATTCTGATTGCAACAACAAGAATAATCTCAGGGCCACCACAGAAGGGCCTATCTATAGCAATGGACC
ACAGATTGATGTGCACAACTCACTGGATCATCCTACTGACAGAGAGAGCAATACTAATGTGCACGTAGAAAGTGTTTTTT
TCTCTGCAGTAGAACAGCTAACAAAGATGAACCCTCCTCCGGTGCCAAGGCCTAAATATTCTATACTTCAGGTTGGAGTC
CAAGATAGAAGCACGGTAAGAACGGCTCCAGGTTTGATATATCCTTCAAGAAGGCTTTCAGGAGAGATACGCAAATTACC
TGAACAAATAAACGCCAAGTCTTGCGATCTGAAGCCTGCCCTTGAAAGAGGCTCAAATGTGACAGTTGATCACAGGAACA
CAAAAGTGGCTACAATCTTGCAGAGGGTTGATCACATTCGTCAGGCTCACGCAGAAAACTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis