Browse Element(s) Details


Os.53992.1.S1_at

Description gb:AK101184.1
DB_XREF= gi:32986393
TID=Os.53992.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029I12, full insert sequence.
FL= gb:AK101184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4648011/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46490Os.56318.1.S1_at7/116+28228547..28232906expressed protein
LOC_Os06g46500Os.49496.1.S1_at11/116+28233462..28237337L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os06g46510OsAffx.31069.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46510Os.25754.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46520OsAffx.20387.1.S1_x_at2/116+28246043..28248619retrotransposon protein, putative, unclassified
LOC_Os06g46530NANA6+28248872..28251446retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53992.1.S1_at--686--7831Chr06:28224386..28224410 (25 bp)
GGTAATACTGAACCCACTGATTCTG
LOC_Os06g46480
Os.53992.1.S1_at--1121--1231Chr06:28224328..28224352 (25 bp)
AGTTGGAAGCCATTTCCTTCTTGGA
LOC_Os06g46480
Os.53992.1.S1_at--1007--10671Chr06:28224315..28224339 (25 bp)
TTCCTTCTTGGAGTATGCTGCAACG
LOC_Os06g46480
Os.53992.1.S1_at--485--8191Chr06:28224145..28224169 (25 bp)
GGAAGCTCTTGAACACTGCATTTAT
LOC_Os06g46480
Os.53992.1.S1_at--1105--1971Chr06:28224131..28224155 (25 bp)
ACTGCATTTATGATCCTGTGGTGGT
LOC_Os06g46480
Os.53992.1.S1_at--401--7491Chr06:28224114..28224138 (25 bp)
GTGGTGGTCAGCATTCTTCTTAAAA
LOC_Os06g46480
Os.53992.1.S1_at--298--7431Chr06:28224083..28224107 (25 bp)
GTGTTATTCTACAACTCGCCACAGA
LOC_Os06g46480
Os.53992.1.S1_at--336--6111Chr06:28224017..28224041 (25 bp)
GAGTCCTTAAGGCTGCATGCCAACA
LOC_Os06g46480
Os.53992.1.S1_at--218--2531Chr06:28223976..28224000 (25 bp)
AACTTCAGCTGTTTTCCTAGTGATG
LOC_Os06g46480
Os.53992.1.S1_at--981--6051Chr06:28223862..28223886 (25 bp)
GAGTTAGCTTTGAGCCTCTTCAAGG
LOC_Os06g46480
Os.53992.1.S1_at--747--5471Chr06:28223749..28223773 (25 bp)
GAACTTCCGCAAGCATGTACTGGAG
LOC_Os06g46480
Target Sequence 
GGTAATACTGAACCCACTGATTCTGAAAGCTTATACCTATCAGATGTTAACATTCTTCAGTTGGAAGCCATTTCCTTCTT
GGAGTATGCTGCAACGCTTAATGAAAACAAATATAACCTGCCAGAATGCTCAGCACTGCTGGAAGCTCTTGAACACTGCA
TTTATGATCCTGTGGTGGTCAGCATTCTTCTTAAAAGTTTTCGTGTTATTCTACAACTCGCCACAGAACAAACTCTAGTT
TCATTTAAATCCTTGGATGTAATTACTGGAGTCCTTAAGGCTGCATGCCAACAAGCAAAAGAACTACAAAACTTCAGCTG
TTTTCCTAGTGATGATGTTATCAGCAGTGGATATGGTTCTAAGATAGAAAATATTGAAATGAGTTCGTCAGGAAAGAGAA
CTGAGTATGCTATTATTTGTATAGAGTTAGCTTTGAGCCTCTTCAAGGAATATGTCACCATATCTAGCTATGGAAGAATT
CTAATTTTGCACAATCCTGACTGTATTGAGTGTTTATTCAACTTATTCCAAGAAAAGAACTTCCGCAAGCATGTACTGGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis