Browse Element(s) Details


Os.21295.1.S1_at

Description gb:AK071299.1
DB_XREF= gi:32981322
TID=Os.21295.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088H10, full insert sequence.
FL= gb:AK059456.1 gb:AK071299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4645011/11Polyprenyl synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009536cellular_componentplastid
GO:0004161molecular_functiondimethylallyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21295.1.S1_at--407--2651Chr06:28190515..28190539 (25 bp)
AAGCCATAGAAGCTCTCCCAGACAG
LOC_Os06g46450
Os.21295.1.S1_at--271--911Chr06:28190465..28190489 (25 bp)
AGGCGTGCTCTTATTGACATCACAG
LOC_Os06g46450
Os.21295.1.S1_at--1143--351Chr06:28190380..28190404 (25 bp)
ATAAGGCTGATTTTCGCCACAGGCG
LOC_Os06g46450
Os.21295.1.S1_at--598--10811Chr06:28190334..28190358 (25 bp)
TTGTACACTTTGGTCATTGCATTCT
LOC_Os06g46450
Os.21295.1.S1_at--481--71Chr06:28190319..28190343 (25 bp)
ATTGCATTCTTTTTCATTGTCCAAG
LOC_Os06g46450
Os.21295.1.S1_at--379--831Chr06:28190257..28190281 (25 bp)
ATGGATCGGTATTCCTCAGGATCAC
LOC_Os06g46450
Os.21295.1.S1_at--182--2011Chr06:28190228..28190252 (25 bp)
ACTCTGCAGCTCTAGTGTTCTTAGT
LOC_Os06g46450
Os.21295.1.S1_at--1119--7411Chr06:28190214..28190238 (25 bp)
GTGTTCTTAGTTACGGGTTGCAGCA
LOC_Os06g46450
Os.21295.1.S1_at--392--1711Chr06:28190154..28190178 (25 bp)
ACCAGACTGTAGCACTGTAGCCATA
LOC_Os06g46450
Os.21295.1.S1_at--89--2311Chr06:28190097..28190121 (25 bp)
AAATGGATCGGCTCTCCTATCATGA
LOC_Os06g46450
Os.21295.1.S1_at--487--431Chr06:28189989..28190013 (25 bp)
ATCTTCCAAGATTAGGCGCATTACA
LOC_Os06g46450
Target Sequence 
AAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGA
GTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCG
TGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCA
AAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTTACGGGTT
GCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTG
AAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCCNACNCTTCTCTTG
TTGCTTCTGAAGAGAAATCTTGTATGCTTAACTTTGATTGTTTTCAATCTTCCAAGATTAGGCGCATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis