Browse Element(s) Details


OsAffx.16308.1.S1_at

Description tigr:9635.m01742
TID=OsAffx.16308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1732011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein
LOC_Os07g17300OsAffx.28489.1.S1_at11/117+10216583..10219038hypothetical protein
LOC_Os07g17310Os.53898.1.S1_at11/117+10221827..10224447senescence-associated protein, putative, expressed
LOC_Os07g17320OsAffx.16308.1.S1_at11/117+10228390..10229262hypothetical protein
LOC_Os07g17320Os.55138.1.S1_x_at3/117+10228390..10229262hypothetical protein
LOC_Os07g17330Os.11195.1.S1_at11/117+10230137..10230977senescence-associated protein, putative, expressed
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16308.1.S1_at--1082--7231Chr07:10229206..10229230 (25 bp)
GTCCCAGTTGCGAGCCACGATGCGT
LOC_Os07g17320
OsAffx.16308.1.S1_at--709--3432Chr07:10229202..10229226 (25 bp)
CAGTTGCGAGCCACGATGCGTTGCC
LOC_Os07g17320
OsAffx.16308.1.S1_at--962--9132Chr07:10229198..10229222 (25 bp)
TGCGAGCCACGATGCGTTGCCGCCG
LOC_Os07g17320
OsAffx.16308.1.S1_at--461--4311Chr07:10229114..10229138 (25 bp)
CCATCGACAAGTGTGCGCGCTTACT
LOC_Os07g17320
OsAffx.16308.1.S1_at--1162--511Chr07:10229112..10229136 (25 bp)
ATCGACAAGTGTGCGCGCTTACTGG
LOC_Os07g17320
OsAffx.16308.1.S1_at--297--2871Chr07:10229106..10229130 (25 bp)
AAGTGTGCGCGCTTACTGGGGCTCA
LOC_Os07g17320
OsAffx.16308.1.S1_at--406--9291Chr07:10229005..10229029 (25 bp)
TCCGCGTGCTGGTGACCATGGGTTC
LOC_Os07g17320
OsAffx.16308.1.S1_at--924--8911Chr07:10228993..10229017 (25 bp)
TGACCATGGGTTCGAGGTGGGACGA
LOC_Os07g17320
OsAffx.16308.1.S1_at--279--7751Chr07:10228891..10228915 (25 bp)
GGTGTCACGTGGCAACGGCGTAGTC
LOC_Os07g17320
OsAffx.16308.1.S1_at--889--7511Chr07:10228883..10228907 (25 bp)
GTGGCAACGGCGTAGTCGGCGGTGG
LOC_Os07g17320
OsAffx.16308.1.S1_at--331--2171Chr07:10228421..10228441 (21 bp)
ACAAAGCCGAAGGACTGAATTTTAT
LOC_Os07g17320
Target Sequence 
GTCCCAGTTGCGAGCCACGATGCGTTGCCGCCGCCGCCGCGGCCGAGCCGTCCACCAAGCCGCCCCGCCACCGCTCGGCG
AGGACGAAGAAGCCATCGACAAGTGTGCGCGCTTACTGGGGCTCATCTCGCCGGAGAGCTTGAAGACGGGGGACTTCTGT
GGTGGGGATTGGAACATAGGGTTGGTGGGGGCGGCAGCGCCTCCGCGTGCTGGTGACCATGGGTTCGAGGTGGGACGAGG
CGGAGAGGTCAACGAGAAGGGCAAGGAGCACACCGACGAGGGAGAAGAGGCCGGCGAAGGGGAAGTCCTGCCAGGGGTGT
CACGTGGCAACGGCGTAGTCGGCGGTGGCGGCGCTACCAGGCGTGCGCCGCGCCGGTGGCGAGACGCCGGTGCTGATGAG
TGGCACGAGGCACGACGCGATGGCGATGGTGAGGCTGACAAAGCCGAAGGACTGAATTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis