Browse Element(s) Details


OsAffx.24740.3.A1_at

Description tigr:9635.m01748
TID=OsAffx.24740.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1738011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed
LOC_Os07g17370OsAffx.28490.1.S1_at11/117+10256009..10256467hypothetical protein
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24740.3.A1_at--998--3751Chr07:10259373..10259397 (25 bp)
CTCTCTCACTCTTATCGTTTGGTGC
LOC_Os07g17380
OsAffx.24740.3.A1_at--524--2011Chr07:10259366..10259390 (25 bp)
ACTCTTATCGTTTGGTGCTCTGGGC
LOC_Os07g17380
OsAffx.24740.3.A1_at--1147--491Chr07:10259360..10259384 (25 bp)
ATCGTTTGGTGCTCTGGGCAGACCG
LOC_Os07g17380
OsAffx.24740.3.A1_at--1127--4033Chr10:18841092..18841116 (25 bp)
CGAGGGCCCAACCACGATCTTGTAG
NONE
OsAffx.24740.3.A1_at--17--6431Chr07:10259161..10259185 (25 bp)
GATCTTGTAGCAGCGTCGATGCGGC
LOC_Os07g17380
OsAffx.24740.3.A1_at--427--4871Chr07:10259111..10259135 (25 bp)
GCTAGGACCACATCGGCGCCTGGCT
LOC_Os07g17380
OsAffx.24740.3.A1_at--501--4671Chr07:10259061..10259085 (25 bp)
GCGGGTCGTCGAACTGCTTCACCAC
LOC_Os07g17380
OsAffx.24740.3.A1_at--998--1771Chr07:10259038..10259062 (25 bp)
ACCGCCACTGGTGGTTTGGGCCTTG
LOC_Os07g17380
OsAffx.24740.3.A1_at--336--10131Chr07:10259002..10259026 (25 bp)
TTGGGCTTTCGGCTTTAGGGCCTCA
LOC_Os07g17380
OsAffx.24740.3.A1_at--698--4871Chr07:10258991..10259015 (25 bp)
GCTTTAGGGCCTCATTTTGAAGATG
LOC_Os07g17380
OsAffx.24740.3.A1_at--670--5351Chr07:10258973..10258997 (25 bp)
GAAGATGACAACAGGTTCAACTTAA
LOC_Os07g17380
Target Sequence 
CTCTCTCACTCTTATCGTTTGGTGCTCTGGGCAGACCGGGCCGCCGGCCGACGGGGCGATGCGGGAAAGGAGGTCCGGCG
GCCGGCGACGTCGCGGCGGCGGCGGCGACGGCGACGGCGACGACGACGCGGGAGCAAGGGAGCAAGGCGGCGGCGGCGAC
GGCGGCGTGGGAGCAGGGGAGCTTTCGCCGTCGTCACCGAGGGCCCAACCACGATCTTGTAGCAGCGTCGATGCGGCGAC
GAAGGGGAACCCGCCGAGGAGTGCTAGGACCACATCGGCGCCTGGCTCGCTCAGACTGCCGGAAGTCGCCCAGCGGGTCG
TCGAACTGCTTCACCACCGCCACTGGTGGTTTGGGCCTTGGGCCTTGGGCCTTGGGCTTTCGGCTTTAGGGCCTCATTTT
GAAGATGACAACAGGTTCAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24740.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis