Browse Element(s) Details


Os.15305.1.S1_at

Description gb:AK064907.1
DB_XREF= gi:32974925
TID=Os.15305.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000L24, full insert sequence.
FL= gb:AK064907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2136011/11N-dimethylguanosine tRNA methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21340OsAffx.32219.1.S1_x_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32221.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340Os.26596.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32241.1.S1_x_at10/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32220.1.S1_s_at9/1110+10574530..10578117NAD, putative
LOC_Os10g21350OsAffx.242.1.S1_at11/1110+10590023..10594592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21360Os.15305.1.S1_at11/1110+10600802..10607988N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os10g21380OsAffx.20464.1.S1_at11/1110+10611540..10613605retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21390OsAffx.30478.1.S1_at11/1110+10613944..10615648hypothetical protein
LOC_Os10g21390OsAffx.4262.1.S1_at1/1110+10613944..10615648hypothetical protein
LOC_Os10g21400OsAffx.30479.1.S1_at11/1110+10624968..10627769NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0003723molecular_functionRNA binding
GO:0004809molecular_functiontRNA (guanine-N2-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15305.1.S1_at--387--5351Chr10:10607407..10607431 (25 bp)
GAAGAGCCCAAGATTTGTACCTAAT
LOC_Os10g21360
Os.15305.1.S1_at--901--6751Chr10:10607589..10607613 (25 bp)
GTTCAAGCTCAGTTTCTGGAGGCAT
LOC_Os10g21360
Os.15305.1.S1_at--975--3891Chr10:10607604..10607628 (25 bp)
CTGGAGGCATGTATGTCCTTTCGAA
LOC_Os10g21360
Os.15305.1.S1_at--286--6911Chr10:10607614..10607638 (25 bp)
GTATGTCCTTTCGAAAATTTGGTGG
LOC_Os10g21360
Os.15305.1.S1_at--966--10811Chr10:10607632..10607656 (25 bp)
TTGGTGGTCATTACAGATTACTAAC
LOC_Os10g21360
Os.15305.1.S1_at--788--51Chr10:10607648..10607672 (25 bp)
ATTACTAACGGTCAGTTGCGTGGGT
LOC_Os10g21360
Os.15305.1.S1_at--657--6671Chr10:10607662..10607686 (25 bp)
GTTGCGTGGGTTGGTGTTAACTACA
LOC_Os10g21360
Os.15305.1.S1_at--1147--8611Chr10:10607673..10607697 (25 bp)
TGGTGTTAACTACAGGCATGTCCAC
LOC_Os10g21360
Os.15305.1.S1_at--268--4851Chr10:10607701..10607725 (25 bp)
GCTACAATTTTCAACTGCACCAAAC
LOC_Os10g21360
Os.15305.1.S1_at--782--9711Chr10:10607711..10607735 (25 bp)
TCAACTGCACCAAACTCTGGCATTG
LOC_Os10g21360
Os.15305.1.S1_at--418--9831Chr10:10607771..10607795 (25 bp)
TAAATACTCTACCATACCTTACCAT
LOC_Os10g21360
Target Sequence 
GAAGAGCCCAAGATTTGTACCTAATCCTGAAAAATATTGGGGTCCTAAGACAAAGGCTGGGAGACANACCAAAGAGATTA
CCAGTGGACAATTTATAAATATNTTACTGACAGTATGNTTNCNAACTAGGAGATTGAGATCAGTNGCATTCTTTTGTTAG
AAAACCNAGCATATACAAGCTCAAGTTCAAGCTCAGTTTCTGGAGGCATGTATGTCCTTTCGAAAATTTGGTGGTCATTA
CAGATTACTAACGGTCAGTTGCGTGGGTTGGTGTTAACTACAGGCATGTCCACNTTTGCTACAATTTTCAACTGCACCAA
ACTCTGGCATTGNCCAAATTTTGTGAAGATGNCAATCCAANCATATCCTAAATACTCTACCATACCTTACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis