Browse Element(s) Details


OsAffx.19284.1.S1_at

Description tigr:9639.m03740
TID=OsAffx.19284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40790OsAffx.19284.1.S1_at11/1111+23895377..23896465hypothetical protein
LOC_Os11g40800Os.53035.1.S1_at11/1111+23913298..23914447expressed protein
LOC_Os11g40810OsAffx.19285.1.S1_at11/1111+23920279..23923178Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19284.1.S1_at--357--4511Chr11:23895749..23895773 (25 bp)
GCCGAGGACATGTCCGTGCGGAAGC
LOC_Os11g40790
OsAffx.19284.1.S1_at--78--8191Chr11:23895768..23895792 (25 bp)
GGAAGCTGGTCATGTCGCCGTACGA
LOC_Os11g40790
OsAffx.19284.1.S1_at--973--4551Chr11:23895842..23895866 (25 bp)
GCGCTCTGCACCATGGAGGGCTTCT
LOC_Os11g40790
OsAffx.19284.1.S1_at--929--9471Chr11:23895846..23895870 (25 bp)
TCTGCACCATGGAGGGCTTCTCGTG
LOC_Os11g40790
OsAffx.19284.1.S1_at--22--1091Chr11:23895858..23895882 (25 bp)
AGGGCTTCTCGTGGTCGCTCAGCGC
LOC_Os11g40790
OsAffx.19284.1.S1_at--766--3971Chr11:23896065..23896085 (21 bp)
CGGTGGACGCACTACCTCGTCGCGT
LOC_Os11g40790
OsAffx.19284.1.S1_at--1097--4131Chr11:23896098..23896122 (25 bp)
CGCTGCTGATGGTGAGCCGGGTCAT
LOC_Os11g40790
OsAffx.19284.1.S1_at--326--8751Chr11:23896155..23896179 (25 bp)
TGTACGTGCCGGACATGGCGTCGCG
LOC_Os11g40790
OsAffx.19284.1.S1_at--397--1931Chr11:23896302..23896326 (25 bp)
ACGGCATGTCGTTCCGGACTGTGCG
LOC_Os11g40790
OsAffx.19284.1.S1_at--297--771Chr11:23896307..23896331 (25 bp)
ATGTCGTTCCGGACTGTGCGCCAGC
LOC_Os11g40790
OsAffx.19284.1.S1_at--782--4371Chr11:23896368..23896392 (25 bp)
CCAACGGGAAGGTCAGCGAGCTGCT
LOC_Os11g40790
Target Sequence 
GCCGAGGACATGTCCGTGCGGAAGCTGGTCATGTCGCCGTACGACGCCGGCCTCGTCGCCGCCGTCGTCGGCCGCGAGCA
CTTCGGCAAGGTGGCGCTCTGCACCATGGAGGGCTTCTCGTGGTCGCTCAGCGCGCGCGACCGGTGGCGGTGGACGCACT
ACCTCGTCGCGTCGCGCGCCGGCCCGCTGCTGATGGTGAGCCGGGTCATGCCGGACGCCGGGACGACGCGGGGGTTCGCC
GTGTACGTGCCGGACATGGCGTCGCGGCGGTGGGTGGAGGTGAGCAGGCTGGACGCCGGCGGCGAGGCGCTCTACGTCGG
CCGGCTGAGCTCGCGGGCCGTGCCGTCGCTGGACGACGCCGACAAGATCTTCTTCCTCGACGACACCGACGGCATGTCGT
TCCGGACTGTGCGCCAGCCGCGGCCTCCCTACCACGCCGCCGTCTACGACATGGCCAACGGGAAGGTCAGCGAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis