Browse Element(s) Details


Os.3905.1.S1_at

Description gb:AB038234.1
DB_XREF= gi:9796395
GEN=cycH-1
TID=Os.3905.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3905 (NCBI UniGene Cluster)
DEF=Oryza sativa cycH-1 mRNA for cyclin H-1, complete cds.
PROD=cyclin H-1
FL= gb:AB038234.1 gb:AK105468.1 gb:AK101854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5275011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein
LOC_Os03g52780Os.4911.1.S1_s_at11/113+30209402..30212697expressed protein
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3905.1.S1_at--890--3511Chr03:30190686..30190710 (25 bp)
CATGAGGCATATTGACCGCAAGCTT
LOC_Os03g52750
Os.3905.1.S1_at--1094--1532Chr03:30190712..30190736 (25 bp)
AGCATTGTTTGGATCCAAGCTCACA
LOC_Os03g52750
Os.3905.1.S1_at--318--671Chr03:30190882..30190981 (25 bp)
ATGAAGCCCAACTTGACAGCTAGAA
LOC_Os03g52750
Os.3905.1.S1_at--525--7571Chr03:30190993..30191017 (25 bp)
GGGCTGCACCGTGTAAGAATCAGTT
LOC_Os03g52750
Os.3905.1.S1_at--1140--1211Chr03:30191014..30191125 (25 bp)
AGTTCTTTAGTTTGTTGTGGCTCCA
LOC_Os03g52750
Os.3905.1.S1_at--761--2771Chr03:30191135..30191159 (25 bp)
AAGAGCTACTTTCCTGAGCAGGTGA
LOC_Os03g52750
Os.3905.1.S1_at--678--8591Chr03:30191157..30191181 (25 bp)
TGAGGTTCCGTTTTAGCCGAGGACA
LOC_Os03g52750
Os.3905.1.S1_at--478--691Chr03:30191213..30191237 (25 bp)
ATGACCTCGCCTTCTTGTAATCTTG
LOC_Os03g52750
Os.3905.1.S1_at--1132--2371Chr03:30191257..30191281 (25 bp)
AAACTCCTCGTTGCAATGGCTACTG
LOC_Os03g52750
Os.3905.1.S1_at--380--7831Chr03:30191296..30191320 (25 bp)
GGTAATTTATCCCTTGTCAAATGGG
LOC_Os03g52750
Os.3905.1.S1_at--987--3531Chr03:30191334..30191358 (25 bp)
CATCGGATGATTGCCTCCATATACG
LOC_Os03g52750
Target Sequence 
CATGAGGCATATTGACCGCAAGCTTAAGCATTGTTTGGATCCAAGCTCACAGGATGAGCATAAGAAGAAAGAGAAGAAGT
CGAAGCACAAATCAAAAAGGGCAGCTAATGAAGCCCAACTTGACAGCTAGAAAACATACGGTTGGGCTGCACCGTGTAAG
AATCAGTTCTTTAGTTTGTTGTGGCTCCANTTGATCAAAAGAGCTACTTTCCTGAGCAGGTGAGGTTCCGTTTTAGCCGA
GGACAACCAATTTTGAGATGAAGCGAGATAATACCCATGACCTCGCCTTCTTGTAATCTTGTNTGCCTGGAAGCCCTAGC
AAACTCCTCGTTGCAATGGCTACTGTACTTTTTTTGGGGGGTAATTTATCCCTTGTCAAATGGGAAGAAGCAGCATACAT
CGGATGATTGCCTCCATATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis