Browse Element(s) Details


Os.4911.1.S1_s_at

Description gb:AU029507
DB_XREF= gi:3762755
DB_XREF=AU029507
CLONE=E31020_8Z
TID=Os.4911.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4911 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179186.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5278011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein
LOC_Os03g52780Os.4911.1.S1_s_at11/113+30209402..30212697expressed protein
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52810NANA3+30232543..30238700retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4911.1.S1_s_at--554--831Chr03:30210031..30210055 (25 bp)
ATGGAAAGCACAGTCCATCTCCGTG
LOC_Os03g52780
Os.4911.1.S1_s_at--435--5311Chr03:30209833..30209857 (25 bp)
GAAGGATGATCTCTCGAACCAAAAT
LOC_Os03g52780
Os.4911.1.S1_s_at--882--311Chr03:30209768..30209792 (25 bp)
ATACCGATCAGACCAGTGCTGTCAG
LOC_Os03g52780
Os.4911.1.S1_s_at--163--1491Chr03:30209745..30209769 (25 bp)
AGCAAGTTGCAAGACGCCCTCCAAT
LOC_Os03g52780
Os.4911.1.S1_s_at--987--9531Chr03:30209659..30209683 (25 bp)
TCTACCCTGCTGTTATCATTGTTGA
LOC_Os03g52780
Os.4911.1.S1_s_at--349--2511Chr03:30209628..30209652 (25 bp)
AACATCTCTCTGTACATTCGCTTGT
LOC_Os03g52780
Os.4911.1.S1_s_at--937--91Chr03:30209613..30209637 (25 bp)
ATTCGCTTGTGCAGTCCTTCAGGAT
LOC_Os03g52780
Os.4911.1.S1_s_at--194--3331Chr03:30209556..30209580 (25 bp)
CACTAGGGTGTTGTGTCTCGTTTAC
LOC_Os03g52780
Os.4911.1.S1_s_at--327--7171Chr03:30209542..30209566 (25 bp)
GTCTCGTTTACGTGCGCAGGTCAAG
LOC_Os03g52780
Os.4911.1.S1_s_at--937--5011Chr03:30209527..30209551 (25 bp)
GCAGGTCAAGCATCATGGAATCGTT
LOC_Os03g52780
Os.4911.1.S1_s_at--147--7031Chr03:30209472..30209496 (25 bp)
GTACATTACAGATTGTTGCTCTCTA
LOC_Os03g52780
Target Sequence 
ATGGAAAGCACAGTCCATCTCCGTGGATATTGAAAAGGTGTCTGCAAGTTTTGCTACAGGAATATCCGATGTTGCTGAAG
CTTACATGGCAGCTATACAAAATGCTCTGGCTGACAAGAAGGATGATCTCTCGAACCAAAATTCGGTGCAGGAGAAAGCT
AAATACATATCCAACCATCTAAATACCGATCAGACCAGTGCTGTCAGCAAGTTGCAAGACGCCCTCCAATACTTGGCCTA
TGTTGTTNTTTGCTCTTCAATGCCAAGTGTATAACTCTGCAGTTCCATATCTCTACCCTGCTGTTATCATTGTTGAACTG
TTAACATCTCTCTGTACATTCGCTTGTGCAGTCCTTCAGGATTGCCATTATTAGGGCTTCTAGATATCAAACTACACTAG
GGTGTTGTGTCTCGTTTACGTGCGCAGGTCAAGCATCATGGAATCGTTAGTTGGNTGTGCCTTATTTGTATTGTTTGGGT
ACATTACAGATTGTTGCTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4911.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis