Browse Element(s) Details


Os.22566.1.A1_at

Description gb:AK112083.1
DB_XREF= gi:37988746
TID=Os.22566.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E06, full insert sequence.
FL= gb:AK112083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5279411/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein
LOC_Os03g52780Os.4911.1.S1_s_at11/113+30209402..30212697expressed protein
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52810NANA3+30232543..30238700retrotransposon protein, putative, unclassified
LOC_Os03g52820NANA3+30239329..30242470retrotransposon protein, putative, unclassified
LOC_Os03g52830NANA3+30243651..30246166FATC domain containing protein, expressed
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0000166molecular_functionnucleotide binding
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22566.1.A1_at--1053--2711Chr03:30215849..30215956 (25 bp)
AAGCAGCAGCTGATACCGTAAATGG
LOC_Os03g52794
Os.22566.1.A1_at--1107--2291Chr03:30215951..30215975 (25 bp)
AAATGGGTTCGCGTTTCATCCATAC
LOC_Os03g52794
Os.22566.1.A1_at--408--10871Chr03:30215982..30216006 (25 bp)
TTGGCTACAACATCTTCTGGGCACA
LOC_Os03g52794
Os.22566.1.A1_at--458--2551Chr03:30216156..30216180 (25 bp)
AACTGCTGCTCGGTCTGGAAATTTT
LOC_Os03g52794
Os.22566.1.A1_at--462--7731Chr03:30216281..30216305 (25 bp)
GGTGATACCAACACTTGAGGCAGTA
LOC_Os03g52794
Os.22566.1.A1_at--146--6211Chr03:30216297..30216321 (25 bp)
GAGGCAGTACATCAAGCCATGACTA
LOC_Os03g52794
Os.22566.1.A1_at--486--3291Chr03:30216335..30216359 (25 bp)
CAAAGATCACCCTGTGCCAAGGAGA
LOC_Os03g52794
Os.22566.1.A1_at--179--4871Chr03:30216361..30216385 (25 bp)
GCTAGTGTCGTGTGCATGGTTTCAT
LOC_Os03g52794
Os.22566.1.A1_at--700--4771Chr03:30216398..30216422 (25 bp)
GCTCCAACTGTTGCACATCGTATTG
LOC_Os03g52794
Os.22566.1.A1_at--518--211Chr03:30216480..30216504 (25 bp)
ATTTGTCCCCTTTTGTACTGATCCA
LOC_Os03g52794
Os.22566.1.A1_at--914--2331Chr03:30216547..30216571 (25 bp)
AAAGATGCACTTTGACCCGTTTATA
LOC_Os03g52794
Target Sequence 
AAGCAGCAGCTGATACCGTAAATGGGTTCGCGTTTCATCCATACCTTCCTTTGGCTACAACATCTTCTGGGCACAGAAGA
TTTGGCATGGAGGATGAAATTGAAGAAGAGCTGAGCTTGGCTGGTGATGAGAACTGCTGCTCGGTCTGGAAATTTTCTTC
CTTGCAAGAAGCTTGAAAGTTGAAACTACATCAAGGCCTGGATAAGCGAAAATTTTGGATCATAGATGTTGAAATTGTTG
CAATCAGTTTGCAGATGGTGATACCAACACTTGAGGCAGTACATCAAGCCATGACTATAAAAGCAGTCACCAAAGATCAC
CCTGTGCCAAGGAGAAGCTAGTGTCGTGTGCATGGTTTCATTGTCAAATGGTTGCTCCAACTGTTGCACATCGTATTGGT
AACAACTGATGTAGGCTGAAGCTAGTAAAGCATAATGTATTCATCGACAGCTACAATTTGTCCCCTTTTGTACTGATCCA
ACTCAAATGCTTTAACAATGTCGGATGACATGGAATGATGGCAAAGATGCACTTTGACCCGTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22566.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis