Browse Element(s) Details


Os.51552.1.S1_at

Description gb:AK063056.1
DB_XREF= gi:32973074
TID=Os.51552.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F04, full insert sequence.
FL= gb:AK063056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5284011/11Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52810NANA3+30232543..30238700retrotransposon protein, putative, unclassified
LOC_Os03g52820NANA3+30239329..30242470retrotransposon protein, putative, unclassified
LOC_Os03g52830NANA3+30243651..30246166FATC domain containing protein, expressed
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006544biological_processglycine metabolism
GO:0006563biological_processL-serine metabolism
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0009626biological_processhypersensitive response
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51552.1.S1_at--432--6591Chr03:30250706..30250730 (25 bp)
GATTGTTCAGTGTTTGGTCCACCGA
LOC_Os03g52840
Os.51552.1.S1_at--591--7271Chr03:30250722..30250746 (25 bp)
GTCCACCGACGCATTGCTGAATTGT
LOC_Os03g52840
Os.51552.1.S1_at--291--8511Chr03:30250746..30250770 (25 bp)
TGGCAATCTGTTTGGTGCAGGGTCT
LOC_Os03g52840
Os.51552.1.S1_at--280--1931Chr03:30250890..30250914 (25 bp)
ACGGTTGATTGCGTTCTATCGGTTG
LOC_Os03g52840
Os.51552.1.S1_at--444--3692Chr07:19487493..19487512 (20 bp)
CTATCGGTTGCCTTTGTTCAGATTA
NONE
Os.51552.1.S1_at--736--8631Chr03:30251008..30251032 (25 bp)
TGGGTTTTCCTTGCGTGCAGATACA
LOC_Os03g52840
Os.51552.1.S1_at--436--7591Chr03:30251100..30251124 (25 bp)
GGGAGGTAAATCATTTTCACTCTTT
LOC_Os03g52840
Os.51552.1.S1_at--459--10511Chr03:30251115..30251139 (25 bp)
TTCACTCTTTATCTTGCCTTGTCAT
LOC_Os03g52840
Os.51552.1.S1_at--214--10131Chr03:30251147..30251171 (25 bp)
TATGAACTCCAGCTTTCATGCGCAT
LOC_Os03g52840
Os.51552.1.S1_at--1118--4951Chr03:30251168..30251192 (25 bp)
GCATCAATAGCCTTTAGTCCTCTTT
LOC_Os03g52840
Os.51552.1.S1_at--192--3771Chr03:30251187..30251211 (25 bp)
CTCTTTTGTTTCCTGCTTTGGGCGA
LOC_Os03g52840
Target Sequence 
GATTGTTCAGTGTTTGGTCCACCGACGCATTGCTGAATTGTGGCAATCTGTTTGGTGCAGGGTCTGGAGCTCATCCCGTC
GGAGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCG
CGAGATACTACGGTGGAAACGAGTACGGTTGATTGCGTTCTATCGGTTGCCTTTGTTCAGATTATTTGGGTGTTAAAAAT
GTTTAATCTGAAAGAGAAATCAGTGCCTGATGGGAGTGAATGATGTGAATTTCTGGTGGCTCTGGGTTTTCCTTGCGTGC
AGATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAGG
TAAATCATTTTCACTCTTTATCTTGCCTTGTCATGTTTTTATATGAACTCCAGCTTTCATGCGCATCAATAGCCTTTAGT
CCTCTTTTGTTTCCTGCTTTGGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis