Browse Element(s) Details


OsAffx.28901.3.S1_at

Description tigr:9631.m05179
TID=OsAffx.28901.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative NPH3 domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5288011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28901.3.S1_at--279--2591Chr03:30278433..30278457 (25 bp)
AACGTCGTGGCGTCGAGAGCGTCAC
LOC_Os03g52880
OsAffx.28901.3.S1_at--634--5871Chr03:30278468..30278492 (25 bp)
GAGCCCATAGGCGAATCGTCTGAAT
LOC_Os03g52880
OsAffx.28901.3.S1_at--1--5991Chr03:30278531..30278555 (25 bp)
GAGAAATCATCCAACGTTGCCAATC
LOC_Os03g52880
OsAffx.28901.3.S1_at--542--6691Chr03:30278546..30278570 (25 bp)
GTTGCCAATCGAAGATCCAGCCAGA
LOC_Os03g52880
OsAffx.28901.3.S1_at--307--3411Chr03:30278567..30278591 (25 bp)
CAGAAATCGCCCCATCTGTATGATT
LOC_Os03g52880
OsAffx.28901.3.S1_at--57--10111Chr03:30278585..30278609 (25 bp)
TATGATTTCGCACGCTTACGTTGCA
LOC_Os03g52880
OsAffx.28901.3.S1_at--888--9931Chr03:30278601..30278625 (25 bp)
TACGTTGCATCGTTCGTGTGCACGA
LOC_Os03g52880
OsAffx.28901.3.S1_at--1125--2871Chr03:30278653..30278677 (25 bp)
AAGGGATCCGTGTGTGTTGTATGTA
LOC_Os03g52880
OsAffx.28901.3.S1_at--969--5571Chr03:30278683..30278707 (25 bp)
GAAATGCCATTTTGTAGCCTGTCAT
LOC_Os03g52880
OsAffx.28901.3.S1_at--834--9991Chr03:30278697..30278721 (25 bp)
TAGCCTGTCATCTGTTACGTTTCAT
LOC_Os03g52880
OsAffx.28901.3.S1_at--819--9931Chr03:30278712..30278736 (25 bp)
TACGTTTCATGTGTGCTTGTCGACT
LOC_Os03g52880
Target Sequence 
AACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGC
TCGAGATGAAAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATCTGTATGATTT
CGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGACACGGAACATAAGGGATCCGTGTGTGTTGT
ATGTATGTACGAAATGCCATTTTGTAGCCTGTCATCTGTTACGTTTCATGTGTGCTTGTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28901.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis