Browse Element(s) Details


OsAffx.26632.1.S1_x_at

Description tigr:9631.m05181
TID=OsAffx.26632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5290010/11hypothetical protein
LOC_Os12g301207/11retrotransposon protein, putative, unclassified
LOC_Os04g491204/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26632.1.S1_x_at--186--8551Chr03:30287981..30288001 (21 bp)
TGGAGAACCTGCAGGCTAGAGAAAA
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--1041--6853Chr03:30288181..30288205 (25 bp)
GTTTGTACCCCTAATGTTGATACTG
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--309--6191NONE
GAGGACTGTAATGCACAACATAGTT
NONE
OsAffx.26632.1.S1_x_at--966--3591Chr03:30289141..30289165 (25 bp)
CTTGGTTGGTTATTACATGATGGCT
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--1151--274Chr03:30289404..30289428 (25 bp)
ATAGATTATCTACTCTTATGAGAGA
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--94--10334Chr03:30289499..30289523 (25 bp)
TTTCATTTGGTTGCTAACGGCAAAC
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--78--2974Chr07:22550981..22551005 (25 bp)
AATGGTGATGCAAATCTAAAATCGC
NONE
OsAffx.26632.1.S1_x_at--1044--2011Chr03:30289601..30289625 (25 bp)
ACTACTTATTATAAAGGCCTCTTTG
LOC_Os03g52900
OsAffx.26632.1.S1_x_at--545--9556Chr07:22551030..22551054 (25 bp)
TCTTTGGTCCTCCTGATGATTCTGA
NONE
OsAffx.26632.1.S1_x_at--477--6295Chr07:22551044..22551068 (25 bp)
GATGATTCTGATCTCCAGTTTGATG
NONE
OsAffx.26632.1.S1_x_at--328--10415Chr07:22551077..22551100 (24 bp)
TTTTGTGGACATCCCACAAGTATCT
NONE
Target Sequence 
TGGAGAACCTGCAGGCTAGAGAAAATAATAGGATAAGCGAATATGCTTGTTCTTCTATTAATCAAGTTTGTACCCCTAAT
GTTGATACTGAGTCATTAGATGACCAGTTGGAGGATAATTTTTTACTACAACATTTATGTAGTGAAATTATGGAAGAGGT
CATGGATTTTAGTGAGGACTGTAATGCACAACATAGTTTTAAATTTGAACTTGGTTGGTTATTACATGATGGCTTTGTAG
ATATGGAGGAAATTGATTTTAGATGGTTTTGTAGGAATAGATTATCTACTCTTATGAGAGAAGAAGAAATTAAGTGGTAT
CAAAGGGCTAAAACTAAGGATATTTTGGAGGGTGATTCAAATACAAAGTATTTTCATTTGGTTGCTAACGGCAAACATAG
AAAAACCAGAATTTTTCAACTTCAAGATGGGGATCAATTGATAAATGGTGATGCAAATCTAAAATCGCATATTACTACTT
ATTATAAAGGCCTCTTTGGTCCTCCTGATGATTCTGATCTCCAGTTTGATGAAAATAATTTTGTGGACATCCCACAAGTA
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26632.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis