Browse Element(s) Details


Os.49820.1.S1_at

Description gb:AK111764.1
DB_XREF= gi:37988427
TID=Os.49820.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062O11, full insert sequence.
FL= gb:AK111764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5287011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52830NANA3+30243651..30246166FATC domain containing protein, expressed
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49820.1.S1_at--664--10371Chr03:30271620..30271644 (25 bp)
TTTTCACCTTACAATTGGGCAGATC
LOC_Os03g52870
Os.49820.1.S1_at--207--7131Chr03:30271648..30271672 (25 bp)
GTCATGAACCTCTCTGATGGCTAAC
LOC_Os03g52870
Os.49820.1.S1_at--182--6811Chr03:30271702..30271726 (25 bp)
GTTTTGTTTGTTACACGTCCTATAT
LOC_Os03g52870
Os.49820.1.S1_at--908--10011Chr03:30271757..30271781 (25 bp)
TAGCATCAACATCATTTCTGGCCAT
LOC_Os03g52870
Os.49820.1.S1_at--866--5471Chr03:30271782..30271806 (25 bp)
GAACATCTGAAGCTGCAACGGCAAG
LOC_Os03g52870
Os.49820.1.S1_at--145--6271Chr03:30271889..30271913 (25 bp)
GATGTGTACTAGTTGAAGCCGCGAC
LOC_Os03g52870
Os.49820.1.S1_at--542--1671Chr03:30271905..30271929 (25 bp)
AGCCGCGACTTGGTATTCATCTTAA
LOC_Os03g52870
Os.49820.1.S1_at--19--7931Chr03:30272008..30272032 (25 bp)
GGATTGTTAATTACCCTCTTTGAAG
LOC_Os03g52870
Os.49820.1.S1_at--229--2331Chr03:30272045..30272069 (25 bp)
AAAGTTCATCGGGTGCTTATTCATA
LOC_Os03g52870
Os.49820.1.S1_at--229--6951Chr03:30272071..30272095 (25 bp)
GTAGTATTCCCAGTTTATTGTGATG
LOC_Os03g52870
Os.49820.1.S1_at--468--2091Chr03:30272149..30272173 (25 bp)
ACATACTTCACACTTCTACTTGTAA
LOC_Os03g52870
Target Sequence 
TTTTCACCTTACAATTGGGCAGATCAACGTCATGAACCTCTCTGATGGCTAACGGTTTGAGCGAATTGAAGGAAATTGCT
GGGTTTTGTTTGTTACACGTCCTATATATACTGTGATGAAGACAAGTATGAAATGAATAGCATCAACATCATTTCTGGCC
ATGAACATCTGAAGCTGCAACGGCAAGTGGTAGAAATGAAGAGCGTATATAGGTAAGTTTGCTTTCAGAAAGTGGCCGGG
GGGAATTTTTGATACATGCTCATATATCTGATGTGTACTAGTTGAAGCCGCGACTTGGTATTCATCTTAAGGATCGATTG
AAATCAAGATTAATTGGGAACCAATAAAAGGGGATAATTTCAAACTGTTTTTATAGGTTGACGTTAGAGGATTGTTAATT
ACCCTCTTTGAAGATTAGCACCAAAAAAGTTCATCGGGTGCTTATTCATATGTAGTATTCCCAGTTTATTGTGATGTTCA
ATGCAAAACTTATGCTCAGTTATGTTTCGATTTGGTTTATCCTTTTTATACATACTTCACACTTCTACTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis