Browse Element(s) Details


OsAffx.3590.1.S1_at

Description tigr:9631.m05176
TID=OsAffx.3590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5285011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52810NANA3+30232543..30238700retrotransposon protein, putative, unclassified
LOC_Os03g52820NANA3+30239329..30242470retrotransposon protein, putative, unclassified
LOC_Os03g52830NANA3+30243651..30246166FATC domain containing protein, expressed
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3590.1.S1_at--1058--5511Chr03:30257755..30257779 (25 bp)
GAAAAGAATGACTGTTGCTCCTGGA
LOC_Os03g52850
OsAffx.3590.1.S1_at--719--3871Chr03:30257749..30257768 (20 bp)
CTGTTGCTCCTGGAGTGCTGCGGAG
LOC_Os03g52850
OsAffx.3590.1.S1_at--877--8031Chr03:30257498..30257522 (25 bp)
GGAGATCTAGACGAGGCAAGGATTT
LOC_Os03g52850
OsAffx.3590.1.S1_at--208--3711Chr03:30257492..30257516 (25 bp)
CTAGACGAGGCAAGGATTTGGACTT
LOC_Os03g52850
OsAffx.3590.1.S1_at--617--7611Chr03:30257455..30257479 (25 bp)
GGGGATATGGCGAGACTGCCACCCA
LOC_Os03g52850
OsAffx.3590.1.S1_at--222--6151Chr03:30257402..30257426 (25 bp)
GAGGTCTCCCCTAGAGGCGGCAAGC
LOC_Os03g52850
OsAffx.3590.1.S1_at--1054--3711Chr03:30257385..30257409 (25 bp)
CGGCAAGCCCCGAGTGGACAACGGT
LOC_Os03g52850
OsAffx.3590.1.S1_at--755--3231Chr03:30257382..30257406 (25 bp)
CAAGCCCCGAGTGGACAACGGTGGA
LOC_Os03g52850
OsAffx.3590.1.S1_at--178--7511Chr03:30257362..30257386 (25 bp)
GTGGACGTGGGCAGCCAATGAAGGT
LOC_Os03g52850
OsAffx.3590.1.S1_at--651--8011Chr03:30257337..30257361 (25 bp)
GGAGGCACAACCAAGTAGCAGGACA
LOC_Os03g52850
OsAffx.3590.1.S1_at--788--8231Chr03:30257334..30257358 (25 bp)
GGCACAACCAAGTAGCAGGACAGGG
LOC_Os03g52850
Target Sequence 
GAAAAGAATGACTGTTGCTCCTGGAGTGCTGCGGAGGGGAGGAGGGAGGAGGAGGAGGAGGTCGGGAGATCTAGACGAGG
CAAGGATTTGGACTTGGACGACAGTGAGGGGATATGGCGAGACTGCCACCCATCACGGCCTCCGGCTCGCTGGCAGGGAG
GAGGTCTCCCCTAGAGGCGGCAAGCCCCGAGTGGACAACGGTGGACGTGGGCAGCCAATGAAGGTGGAGGCACAACCAAG
TAGCAGGACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis