Browse Element(s) Details


OsAffx.13474.1.S1_at

Description tigr:9631.m05183
TID=OsAffx.13474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5292011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13474.1.S1_at--523--4671Chr03:30306852..30306876 (25 bp)
GCGGTCGAGACCATCCGTGGACTCT
LOC_Os03g52920
OsAffx.13474.1.S1_at--343--8531Chr03:30306835..30306859 (25 bp)
TGGACTCTCACCGTGTACATCCATA
LOC_Os03g52920
OsAffx.13474.1.S1_at--575--2011Chr03:30306832..30306856 (25 bp)
ACTCTCACCGTGTACATCCATACGA
LOC_Os03g52920
OsAffx.13474.1.S1_at--1149--3731Chr03:30306829..30306853 (25 bp)
CTCACCGTGTACATCCATACGACGA
LOC_Os03g52920
OsAffx.13474.1.S1_at--151--5071Chr03:30306787..30306811 (25 bp)
GCAGCGGCAGCTGGAACCGTGTCGC
LOC_Os03g52920
OsAffx.13474.1.S1_at--387--1651Chr03:30306756..30306780 (25 bp)
AGCGACAACAGCAGGCGAGCGCGTT
LOC_Os03g52920
OsAffx.13474.1.S1_at--184--2491Chr03:30306750..30306774 (25 bp)
AACAGCAGGCGAGCGCGTTCGTGTT
LOC_Os03g52920
OsAffx.13474.1.S1_at--847--1651Chr03:30306739..30306763 (25 bp)
AGCGCGTTCGTGTTCCGGCACCGGA
LOC_Os03g52920
OsAffx.13474.1.S1_at--223--3351Chr03:30306617..30306641 (25 bp)
CACGGTGCACCTGGCGTTCGACGTG
LOC_Os03g52920
OsAffx.13474.1.S1_at--692--8031Chr03:30306503..30306527 (25 bp)
GGAGTGCGGTGACCCGGAGGTGCTG
LOC_Os03g52920
OsAffx.13474.1.S1_at--940--8351Chr03:30306469..30306493 (25 bp)
GGCGGCACGGGCGACTTCGCGTTCG
LOC_Os03g52920
Target Sequence 
GCGGTCGAGACCATCCGTGGACTCTCACCGTGTACATCCATACGACGACGGCGGCGGCGGCAGCGGCAGCGGCAGCTGGA
ACCGTGTCGCCGCCGCAGCGACAACAGCAGGCGAGCGCGTTCGTGTTCCGGCACCGGATGACGGCGGGGCCGGAGAGCGC
GTCGAGGACGGTGGGCGCGGCGACGGGGTTCGTGCTCCCTGCCGAGGCCGCCGGCTCGGCGATGTCGGTGTTCGACACGG
TGCACCTGGCGTTCGACGTGTCGGGGATGTCCGGGAGCGTCTGCGTCCAGGCGGCGGCGGGGGACGGCGGCGGCGGCGAG
AAGGCGCCACGGCCGACGAGGCGGCGCGGGGAGTGCGGTGACCCGGAGGTGCTGCGGGTGGTGGGCGGCACGGGCGACTT
CGCGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis