Browse Element(s) Details


OsAffx.25694.1.S1_at

Description tigr:9631.m05187
TID=OsAffx.25694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5296011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25694.1.S1_at--346--7851Chr03:30326731..30326755 (25 bp)
GGTAGAGGAAGCTACCCAGAAGCTT
LOC_Os03g52960
OsAffx.25694.1.S1_at--76--2711Chr03:30326723..30326747 (25 bp)
AAGCTACCCAGAAGCTTCCTCCAAT
LOC_Os03g52960
OsAffx.25694.1.S1_at--1104--531Chr03:30326675..30326699 (25 bp)
ATCCTCTGCTGGAGGCCCAGTCCGG
LOC_Os03g52960
OsAffx.25694.1.S1_at--1112--1311Chr03:30326615..30326639 (25 bp)
AGATGGCGGCCCAAGCCAGCAAGGA
LOC_Os03g52960
OsAffx.25694.1.S1_at--304--5351Chr03:30326428..30326452 (25 bp)
GAAGATGGTGCCCTCTAGGCACAGT
LOC_Os03g52960
OsAffx.25694.1.S1_at--441--9171Chr03:30326420..30326444 (25 bp)
TGCCCTCTAGGCACAGTGCGAGACA
LOC_Os03g52960
OsAffx.25694.1.S1_at--944--7291Chr03:30326405..30326429 (25 bp)
GTGCGAGACAGGCAGCACGCCCCTT
LOC_Os03g52960
OsAffx.25694.1.S1_at--1108--6711Chr03:30326329..30326353 (25 bp)
GTTCATTGACAAAGAGGAGGACCTC
LOC_Os03g52960
OsAffx.25694.1.S1_at--965--3251Chr03:30326305..30326329 (25 bp)
CAACGACGAGGCGATTGCGGCGTTC
LOC_Os03g52960
OsAffx.25694.1.S1_at--459--8371Chr03:30326287..30326311 (25 bp)
GGCGTTCGTCAAGGCTTTCGACAAG
LOC_Os03g52960
OsAffx.25694.1.S1_at--915--9371Chr03:30326282..30326306 (25 bp)
TCGTCAAGGCTTTCGACAAGCCACT
LOC_Os03g52960
Target Sequence 
GGTAGAGGAAGCTACCCAGAAGCTTCCTCCAATCCCACTCAGCGCCCCTACGGCCCATCCTCTGCTGGAGGCCCAGTCCG
GGTTTGAGGCCCAGGAGGAGCTGGCGGCACAGGAGGAGATGGCGGCCCAAGCCAGCAAGGAGGTGGTGCCCGACGTGGTG
GGCTACCTGGACGAGGGCGACGGCCTGGCCCACATCGCCCCTCCAGGCGCACCTGCGCCACCTCGCCTGTTCGAGCCTCT
ACCCGAGCCGCTTCTCCCTCAGCCGCCGCCCCCCGCTCCAGCACGCCGTGGCCGCTCCAAGGTGAAGATGGTGCCCTCTA
GGCACAGTGCGAGACAGGCAGCACGCCCCTTCTCGGTGCCCGTCTCCAAGCACACCGAAGGCCGCCTCCTCAAGGAGATG
GGGTTCATTGACAAAGAGGAGGACCTCAACGACGAGGCGATTGCGGCGTTCGTCAAGGCTTTCGACAAGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis