Browse Element(s) Details


Os.53279.1.S1_at

Description gb:AK071772.1
DB_XREF= gi:32981795
TID=Os.53279.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110F02, full insert sequence.
FL= gb:AK071772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5300011/11double strand break repair protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008022molecular_functionprotein C-terminus binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53279.1.S1_at--1093--4731Chr03:30347941..30347965 (25 bp)
GCTGAGTTCGAACAATCCACATTTT
LOC_Os03g53000
Os.53279.1.S1_at--711--1151Chr03:30348262..30348286 (25 bp)
AGTTTGTGGCTGTCTTAAATTCGAA
LOC_Os03g53000
Os.53279.1.S1_at--238--5551Chr03:30348287..30348311 (25 bp)
GAAAGCCAAGCTCAGACAACTCAAG
LOC_Os03g53000
Os.53279.1.S1_at--802--5251Chr03:30348330..30348354 (25 bp)
GAATCTGCTGACAAGGCTCCAAAGG
LOC_Os03g53000
Os.53279.1.S1_at--364--6291Chr03:30348426..30348450 (25 bp)
GATGAACCCTCTGAGACTGGTGGCG
LOC_Os03g53000
Os.53279.1.S1_at--967--1951Chr03:30348441..30348465 (25 bp)
ACTGGTGGCGGCGATCTTCATAGCT
LOC_Os03g53000
Os.53279.1.S1_at--286--1591Chr03:30348462..30348486 (25 bp)
AGCTCTCCTGAGAAAACTGCAGCCA
LOC_Os03g53000
Os.53279.1.S1_at--944--2111Chr03:30348610..30348634 (25 bp)
ACAGGACCTACATGGGAGTTCTTAA
LOC_Os03g53000
Os.53279.1.S1_at--519--171Chr03:30348704..30348728 (25 bp)
ATTTTCATTTCGTCAAGTGTGTCAA
LOC_Os03g53000
Os.53279.1.S1_at--244--7471Chr03:30348720..30348744 (25 bp)
GTGTGTCAATCATGTACCTTGTGAA
LOC_Os03g53000
Os.53279.1.S1_at--451--7311Chr03:30348752..30348776 (25 bp)
GTGCATGTGGAGCTAAACCTTGAGT
LOC_Os03g53000
Target Sequence 
GCTGAGTTCGAACAATCCACATTTTCAAAGTTTGTGGCTGTCTTAAATTCGAAGAAAGCCAAGCTCAGACAACTCAAGGA
CAAACTCACAGAATTTGAATCTGCTGACAAGGCTCCAAAGGAGGAGGATGAGAACTCCACTGATAAGACAGAGCTTTTTG
AGGAAGCAAGTGACAAAGATGCAAGCGTTAATGATGAACCCTCTGAGACTGGTGGCGGCGATCTTCATAGCTCTCCTGAG
AAAACTGCAGCCACCTCCAGAGGGGGGAGGGGTCGCAAGAGGACTAGAAAATAGCCTGAACAAGCAACCTAACTGCTAGA
CTGAATATGACAGTATAACAAGACCTACATGCGAATTCTTAATGTTAAGGATATCAACAGGACCTACATGGGAGTTCTTA
ATATCCTTAACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCATGCAACTAATTTTCATTT
CGTCAAGTGTGTCAATCATGTACCTTGTGAACATTTAAGTGCATGTGGAGCTAAACCTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis