Browse Element(s) Details


Os.7116.1.S1_at

Description gb:AK071734.1
DB_XREF= gi:32981757
TID=Os.7116.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108N23, full insert sequence.
FL= gb:AK071734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5302010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7116.1.S1_at--244--9371NONE
TCGAGACCACGATTGCGGCTTGTGA
NONE
Os.7116.1.S1_at--36--2311Chr03:30359435..30359459 (25 bp)
AAAGGCAGTGGAAGAGGCTCTCAAG
LOC_Os03g53020
Os.7116.1.S1_at--1028--1171Chr03:30359462..30359486 (25 bp)
AGTAGAGAGGAACCAGCCTGACAGC
LOC_Os03g53020
Os.7116.1.S1_at--724--6351Chr03:30359487..30359511 (25 bp)
GATGCCCCATTTCCTGGAAGCAAAG
LOC_Os03g53020
Os.7116.1.S1_at--1142--2931Chr03:30359509..30359533 (25 bp)
AAGGCTGGACACAGACATCTCATGT
LOC_Os03g53020
Os.7116.1.S1_at--181--10391Chr03:30359554..30359578 (25 bp)
TTTTGAAACATGATCCTGCTGGGAC
LOC_Os03g53020
Os.7116.1.S1_at--217--2451Chr03:30359627..30359651 (25 bp)
AAAATCTCCATATCTCCTTGTCAAT
LOC_Os03g53020
Os.7116.1.S1_at--293--3091Chr03:30359688..30359712 (25 bp)
AATAATAGCTTCCTCTCTTTTCTAC
LOC_Os03g53020
Os.7116.1.S1_at--255--1271Chr03:30359787..30359811 (25 bp)
AGATTTGTCATATCTCAGTCTCTTC
LOC_Os03g53020
Os.7116.1.S1_at--636--7151Chr03:30359804..30359828 (25 bp)
GTCTCTTCCTGTTCCAATCACAAAG
LOC_Os03g53020
Os.7116.1.S1_at--904--6451Chr03:30359830..30359854 (25 bp)
GATCAATTTCACATCCCACATAAAC
LOC_Os03g53020
Target Sequence 
TCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCTCAAGGAAGTAGAGAGGAACCAGCCTGAC
AGCGATGCCCCATTTCCTGGAAGCAAAGGCTGGACACAGACATCTCATGTGCAAAATGTGTTTTGATCGGTTTTGAAACA
TGATCCTGCTGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCC
TTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTACAAGGAAAAAAG
AAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCATATCTCA
GTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCACATCCCACATAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis