Browse Element(s) Details


Os.27274.1.S1_at

Description gb:AK121838.1
DB_XREF= gi:37991461
TID=Os.27274.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100L17, full insert sequence.
FL= gb:AK121838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5305010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27274.1.S1_at--1092--6171Chr03:30375429..30375453 (25 bp)
GAGGAGCCTAGTTTGTACATACTGC
LOC_Os03g53050
Os.27274.1.S1_at--133--331Chr03:30375447..30375471 (25 bp)
ATACTGCTCTGTTCCTAACTGTTGG
LOC_Os03g53050
Os.27274.1.S1_at--372--9751Chr03:30375554..30375578 (25 bp)
TAATTTTGTAGCCTTTTCTCTCCTT
LOC_Os03g53050
Os.27274.1.S1_at--340--4551Chr03:30375587..30375611 (25 bp)
GCCCTCTTCATGTTGGTCCTAGAAA
LOC_Os03g53050
Os.27274.1.S1_at--504--2531Chr03:30375610..30375634 (25 bp)
AACTATCTTGTGTTGCAGTGTGACA
LOC_Os03g53050
Os.27274.1.S1_at--225--3472Chr03:30375625..30375649 (25 bp)
CAGTGTGACATTCAGCTGCTGCAGT
LOC_Os03g53050
Os.27274.1.S1_at--847--8751Chr03:30375746..30375770 (25 bp)
TGTACCCTCATCTTCAGTCTGGAAT
LOC_Os03g53050
Os.27274.1.S1_at--1000--5731Chr03:30375846..30375870 (25 bp)
GACGGGATCGTCAGGCTTTAAAATT
LOC_Os03g53050
Os.27274.1.S1_at--97--1791Chr03:30375874..30375898 (25 bp)
ACCGTGTTTTGTCCTGCGAAATTCA
LOC_Os03g53050
Os.27274.1.S1_at--985--6211Chr03:30375906..30375930 (25 bp)
GAGGCCAGTTTCTGGGCGATCTGAA
LOC_Os03g53050
Os.27274.1.S1_at--597--2411Chr03:30375929..30375953 (25 bp)
AAAACGCATGCAGCCATTGTACCTA
NONE
Target Sequence 
GAGGAGCCTAGTTTGTACATACTGCTCTGTTCCTAACTGTTGGGTGGTAGAGACNGCTCTTGCAGAAGAATCCATGGCGA
AAGGAATTTACCGCATAGATGGAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGC
CCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGG
TGGTGGTGAAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGT
ACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTGTTGTGATGGGAAGCATCGGGTTGTTTGTGATGTGTTTGCTAG
CACAAGTGTGATCCTGCGACGGGATCGTCAGGCTTTAAAATTCTGACCGTGTTTTGTCCTGCGAAATTCAGATTTCAGAG
GCCAGTTTCTGGGCGATCTGAAAACGCATGCAGCCATTGTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis