Browse Element(s) Details


Os.5156.1.S1_s_at

Description gb:AU173894
DB_XREF= gi:13165097
DB_XREF=AU173894
CLONE=S20572
TID=Os.5156.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5156 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565702.1 (A.thaliana) putative C3HC4 zinc finger protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5308010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5156.1.S1_s_at--186--5551Chr03:30390726..30390750 (25 bp)
GAAACTACCGATTCATCAGCTCATA
LOC_Os03g53080
Os.5156.1.S1_s_at--502--10531Chr03:30390715..30390739 (25 bp)
TTCATCAGCTCATATCATGTTCATC
LOC_Os03g53080
Os.5156.1.S1_s_at--1030--9651Chr03:30390711..30390735 (25 bp)
TCAGCTCATATCATGTTCATCCGTC
LOC_Os03g53080
Os.5156.1.S1_s_at--1162--1571Chr03:30390709..30390733 (25 bp)
AGCTCATATCATGTTCATCCGTCAG
LOC_Os03g53080
Os.5156.1.S1_s_at--222--4831Chr03:30390708..30390732 (25 bp)
GCTCATATCATGTTCATCCGTCAGT
LOC_Os03g53080
Os.5156.1.S1_s_at--814--3751Chr03:30390707..30390731 (25 bp)
CTCATATCATGTTCATCCGTCAGTC
LOC_Os03g53080
Os.5156.1.S1_s_at--410--3571Chr03:30390705..30390729 (25 bp)
CATATCATGTTCATCCGTCAGTCAG
LOC_Os03g53080
Os.5156.1.S1_s_at--479--10171Chr03:30390703..30390727 (25 bp)
TATCATGTTCATCCGTCAGTCAGAC
LOC_Os03g53080
Os.5156.1.S1_s_at--387--9631Chr03:30390701..30390725 (25 bp)
TCATGTTCATCCGTCAGTCAGACTA
LOC_Os03g53080
Os.5156.1.S1_s_at--842--731Chr03:30390699..30390723 (25 bp)
ATGTTCATCCGTCAGTCAGACTAGG
LOC_Os03g53080
Os.5156.1.S1_s_at--244--6751Chr03:30390697..30390721 (25 bp)
GTTCATCCGTCAGTCAGACTAGGGT
NONE
Target Sequence 
GAAACTACCGATTCATCAGCTCATATCATGTTCATCCGTCAGTCAGACTAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5156.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis