Browse Element(s) Details


Os.47324.1.S1_s_at

Description gb:AK108126.1
DB_XREF= gi:32993335
TID=Os.47324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D05, full insert sequence.
FL= gb:AK108126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5310011/11Response regulator receiver domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53140Os.38289.1.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_s_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47324.1.S1_s_at--345--1691Chr03:30402993..30403017 (25 bp)
AGCCTCTGTCCAAGGAGAAGCTGGG
LOC_Os03g53100
Os.47324.1.S1_s_at--240--1451Chr03:30403008..30403032 (25 bp)
AGAAGCTGGGAGTCATCCTTGCCAA
LOC_Os03g53100
Os.47324.1.S1_s_at--624--7651Chr03:30403015..30403039 (25 bp)
GGGAGTCATCCTTGCCAAATTTAGA
LOC_Os03g53100
Os.47324.1.S1_s_at--441--4391Chr03:30403028..30403052 (25 bp)
GCCAAATTTAGACTTGCTTAACGAC
LOC_Os03g53100
Os.47324.1.S1_s_at--1140--4891Chr03:30403070..30403094 (25 bp)
GCTTAATTAGTATATATGCCTTGCT
LOC_Os03g53100
Os.47324.1.S1_s_at--183--10151Chr03:30403084..30403108 (25 bp)
TATGCCTTGCTAGATCAAGATCTCC
LOC_Os03g53100
Os.47324.1.S1_s_at--167--1191Chr03:30403101..30403125 (25 bp)
AGATCTCCAATAAACGGGATTTATG
LOC_Os03g53100
Os.47324.1.S1_s_at--39--8051Chr03:30403125..30403149 (25 bp)
GGAGTATATATGATGCTGCGTTTAG
LOC_Os03g53100
Os.47324.1.S1_s_at--96--6331Chr03:30403136..30403160 (25 bp)
GATGCTGCGTTTAGGAACAAAATTT
LOC_Os03g53100
Os.47324.1.S1_s_at--228--271Chr03:30403204..30403228 (25 bp)
ATATGTCTGAACTACCTTACAAAGT
LOC_Os03g53100
Os.47324.1.S1_s_at--906--7011Chr03:30403227..30403251 (25 bp)
GTACTATGATCATGATGAGTTTCTC
LOC_Os03g53100
Target Sequence 
AGCCTCTGTCCAAGGAGAAGCTGGGAGTCATCCTTGCCAAATTTAGACTTGCTTAACGACGTATATATATGTGTACTGCT
TAATTAGTATATATGCCTTGCTAGATCAAGATCTCCAATAAACGGGATTTATGGAGTATATATGATGCTGCGTTTAGGAA
CAAAATTTTAGGCGTGTAATCTCCGAAAAAAAAAAGGTGTGTAATGTGTATATATGTCTGAACTACCTTACAAAGTACTA
TGATCATGATGAGTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47324.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis