Browse Element(s) Details


Os.38289.1.S1_at

Description gb:AK102769.1
DB_XREF= gi:32987978
TID=Os.38289.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107G01, full insert sequence.
FL= gb:AK102769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5314011/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53140Os.38289.1.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_s_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53150Os.8585.1.S1_at10/113+30431072..30433699Auxin-responsive protein IAA14, putative, expressed
LOC_Os03g53160OsAffx.13476.1.S1_at8/113+30437817..30438681hypothetical protein
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38289.1.S1_at--1073--8811Chr03:30431996..30432020 (25 bp)
TGTTGTACATCTTCAGGTCCACCTT
LOC_Os03g53140
Os.38289.1.S1_at--1104--10551Chr03:30432127..30432151 (25 bp)
TTCTTGCTCTTCACTGACTGGACGG
LOC_Os03g53140
Os.38289.1.S1_at--225--5751Chr03:30432147..30432171 (25 bp)
GACGGTCATGATGTTCCTGCGGAAC
LOC_Os03g53140
Os.38289.1.S1_at--794--4671Chr03:30432165..30432189 (25 bp)
GCGGAACGACCGAACTGGTGGCCAA
LOC_Os03g53140
Os.38289.1.S1_at--365--9191Chr03:30432195..30432219 (25 bp)
TGCCTGCGCCCTGATGTGTAACATT
LOC_Os03g53140
Os.38289.1.S1_at--108--9591Chr03:30432271..30432295 (25 bp)
TCTTGTTCTAACTTATTGGCGCTGT
LOC_Os03g53140
Os.38289.1.S1_at--558--6031Chr03:30432305..30432329 (25 bp)
GAGATGATTTACTTTCGTGACTGGA
LOC_Os03g53140
Os.38289.1.S1_at--723--2231Chr03:30432358..30432382 (25 bp)
ACAATATTCTTGCTGGCGACCAACT
LOC_Os03g53140
Os.38289.1.S1_at--83--8351Chr03:30432372..30432396 (25 bp)
GGCGACCAACTCTGTGTTAACTAAT
LOC_Os03g53140
Os.38289.1.S1_at--962--6871Chr03:30432397..30432421 (25 bp)
GTATTATGTGTGTATGCCTGCAGCA
LOC_Os03g53140
Os.38289.1.S1_at--729--3491Chr03:30432485..30432509 (25 bp)
CATGGCCACCATGATTATTTCAGGA
LOC_Os03g53140
Target Sequence 
TGTTGTACATCTTCAGGTCCACCTTGCGCAGGTAGGGTGCCCCGTCCATGCTGACCTTCACGAAGGCAGAGCTGTTGCTG
CCGCTGGCATTGGCAGCGGGCTGCTGCTGCTGCTTGTCAGCTTCCTCTTCCTTCTTGCTCTTCACTGACTGGACGGTCAT
GATGTTCCTGCGGAACGACCGAACTGGTGGCCAACCCACTGCCTGCGCCCTGATGTGTAACATTGGAAATTAGCTACTAC
ATCGATTTTTTTTTCTTTTGCTCAGTTTTTTCACATCTTGTTCTAACTTATTGGCGCTGTGAAAAAACTGAGATGATTTA
CTTTCGTGACTGGAAGTTCCATCCAGCTAGATCATGCATGTTACAATATTCTTGCTGGCGACCAACTCTGTGTTAACTAA
TGTATTATGTGTGTATGCCTGCAGCAACTTTATGGTAGTACTGTGTGTATAATGAAAATGCCATCAACTTTAGTTATTGC
CACATGAATCATGGCCACCATGATTATTTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis