Browse Element(s) Details


Os.8585.1.S1_at

Description gb:AK059838.1
DB_XREF= gi:32969856
TID=Os.8585.1
CNT=72
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8585 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative IAA1 protein (iaa1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C11, full insert sequence.
FL= gb:AK062852.1 gb:AK059838.1 gb:AK100790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5315010/11Auxin-responsive protein IAA14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53140Os.38289.1.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_s_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53150Os.8585.1.S1_at10/113+30431072..30433699Auxin-responsive protein IAA14, putative, expressed
LOC_Os03g53160OsAffx.13476.1.S1_at8/113+30437817..30438681hypothetical protein
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8585.1.S1_at--957--3611NONE
CTTCACCCGCAACTGGGAACAATAT
NONE
Os.8585.1.S1_at--488--5291Chr03:30431782..30431806 (25 bp)
GAATGGCTCTGATGCTGTTACAACT
LOC_Os03g53150
Os.8585.1.S1_at--190--3631Chr03:30431731..30431754 (24 bp)
CTTGTTGGAGATGTCCCGTGGCAGA
LOC_Os03g53150
Os.8585.1.S1_at--365--4191Chr03:30431592..30431740 (25 bp)
CCCGTGGCAGATGTTTGTCGAGTCA
LOC_Os03g53150
Os.8585.1.S1_at--1053--10811Chr03:30431578..30431602 (25 bp)
TTGTCGAGTCATGCAAACGCTTGAG
LOC_Os03g53150
Os.8585.1.S1_at--1--7951Chr03:30431554..30431578 (25 bp)
GGATCATGAAGGGTTCCGAAGCCAT
LOC_Os03g53150
Os.8585.1.S1_at--1099--2871Chr03:30431546..30431570 (25 bp)
AAGGGTTCCGAAGCCATTGGTCTTG
LOC_Os03g53150
Os.8585.1.S1_at--1099--4311Chr03:30431449..30431557 (25 bp)
CCATTGGTCTTGCACCAAGAGCAAA
LOC_Os03g53150
Os.8585.1.S1_at--880--2791Chr03:30431384..30431408 (25 bp)
AAGATGCTGAGCATGGTGCCATAAG
LOC_Os03g53150
Os.8585.1.S1_at--553--3631Chr03:30431350..30431374 (25 bp)
CTTGCAGTGTGTTATGGTTTCCTTA
LOC_Os03g53150
Os.8585.1.S1_at--963--7451Chr03:30431194..30431218 (25 bp)
GTGTCCCAAGATCTACTTGATGATT
LOC_Os03g53150
Target Sequence 
CTTCACCCGCAACTGGGAACAATATGAATGAGGTGAATGGCTCTGATGCTGTTACAACTTATGAAGACAAGGATGGTGAC
TGGATGCTTGTTGGAGATGTCCCGTGGCAGATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGC
CATTGGTCTTGCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTATTAAGATGCTGAGCATGG
TGCCATAAGAATGGTGTTCTTGCAGTGTGTTATGGTTTCCTTAGAAATATAAGGTTTTACTTGTTTAGCTGGATTAAAAG
AAGGAAGAGTTGTCATGTTTAATTTGTTTATGGACCAGAAGCAATAATCTATTTGTGTGTAGCTGGATTGGTGTTATGTG
ATGTCCCCTACCGTGTGTCCCAAGATCTACTTGATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis